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  5. Als_g06304

Als_g06304 (EMB2271)


Aliases : EMB2271

Description : SSU processome assembly factor *(RRP9/YAO1) & original description: none


Gene families : OG0006246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006246_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g06304
Cluster HCCA: Cluster_269

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00078230 EMB2271,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Ppi_g31298 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e005033_P001 YAO, Zm00001e005033 SSU processome assembly factor (RRP9/YAO1) 0.02 OrthoFinder output from all 47 species
Zm00001e012407_P002 EMB2271, Zm00001e012407 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0070939 Dsl1/NZR complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 432 474
IPR001680 WD40_repeat 262 299
IPR001680 WD40_repeat 345 380
IPR001680 WD40_repeat 306 340
IPR001680 WD40_repeat 232 257
No external refs found!