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  5. Als_g06013

Als_g06013 (CHMP1A, VPS46.2)


Aliases : CHMP1A, VPS46.2

Description : associated protein of ESCRT-III complex *(VPS46/CHMP1) & original description: none


Gene families : OG0001221 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001221_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g06013
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00047p00217460 CHMP1A, VPS46.2,... Vesicle trafficking.endomembrane trafficking.ESCRT... 0.03 OrthoFinder output from all 47 species
Ala_g34247 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.12 OrthoFinder output from all 47 species
Aop_g12020 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.12 OrthoFinder output from all 47 species
Aspi01Gene14066.t1 CHMP1A, VPS46.2,... associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.11 OrthoFinder output from all 47 species
Ceric.23G038900.1 CHMP1A, VPS46.2,... associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.1 OrthoFinder output from all 47 species
Dcu_g02598 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.25 OrthoFinder output from all 47 species
Len_g58527 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.11 OrthoFinder output from all 47 species
MA_31546g0010 CHMP1A, VPS46.2 VPS46/CHMP1 associated protein of ESCRT-III complex 0.02 OrthoFinder output from all 47 species
Msp_g08498 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.14 OrthoFinder output from all 47 species
Nbi_g10715 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.1 OrthoFinder output from all 47 species
Ppi_g16522 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002861 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.08 OrthoFinder output from all 47 species
Sam_g20146 No alias associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.13 OrthoFinder output from all 47 species
Tin_g05400 CHMP1A, VPS46.2 associated protein of ESCRT-III complex *(VPS46/CHMP1) &... 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032392 DNA geometric change IEP HCCA
BP GO:0032508 DNA duplex unwinding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR005024 Snf7_fam 15 169
No external refs found!