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  5. Als_g04416

Als_g04416 (RHC1A)


Aliases : RHC1A

Description : not classified & original description: none


Gene families : OG0000101 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000101_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g04416

Target Alias Description ECC score Gene Family Method Actions
AT4G26400 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g017038 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g13947 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ala_g26879 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Als_g09386 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27273 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene63212.t1 Aspi01Gene63212 RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g03836 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cba_g05833 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000227.13 RHC1A No description available 0.03 OrthoFinder output from all 47 species
Dac_g21770 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g21809 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ehy_g05901 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01015309001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os05g40980.1 LOC_Os05g40980 E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp.... 0.04 OrthoFinder output from all 47 species
Len_g22925 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
MA_77269g0010 No alias E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Msp_g25662 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pir_g24146 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Pnu_g16883 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g62548 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g17099 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g075910.1.1 RHC1A, Solyc08g075910 Probable E3 ubiquitin-protein ligase RHC1A... 0.04 OrthoFinder output from all 47 species
Spa_g05316 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004672 protein kinase activity IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 264 306
IPR039525 RNF126-like_zinc-ribbon 6 37
No external refs found!