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  5. Als_g04268

Als_g04268 (APO1)


Aliases : APO1

Description : organelle RNA splicing factor *(APO) & original description: none


Gene families : OG0001840 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001840_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g04268

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0032.g024766 emb1629, APO2 organelle RNA splicing factor *(APO) & original... 0.04 OrthoFinder output from all 47 species
Azfi_s0038.g026139 APO1 organelle RNA splicing factor *(APO) & original... 0.02 OrthoFinder output from all 47 species
Ceric.26G036600.1 emb1629, APO2,... organelle RNA splicing factor *(APO) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g09606 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g25543 APO1 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01007874001 APO3 APO protein 3, mitochondrial OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
GSVIVT01023615001 emb1629, APO2 APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Nbi_g26504 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g03107 emb1629, APO2 organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0042.g012737 APO1 organelle RNA splicing factor *(APO) & original... 0.02 OrthoFinder output from all 47 species
Sam_g17814 No alias organelle RNA splicing factor *(APO) & original description: none 0.02 OrthoFinder output from all 47 species
Solyc08g080250.4.1 APO1, Solyc08g080250 APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003847 1-alkyl-2-acetylglycerophosphocholine esterase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006308 DNA catabolic process IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009056 catabolic process IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044248 cellular catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140299 small molecule sensor activity IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
BP GO:1901575 organic substance catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR023342 APO_dom 317 442
IPR023342 APO_dom 55 239
No external refs found!