Als_g02798


Description : LIM-type transcription factor & original description: none


Gene families : OG0000440 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000440_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g02798
Cluster HCCA: Cluster_178

Target Alias Description ECC score Gene Family Method Actions
AT1G01780 No alias GATA type zinc finger transcription factor family protein 0.03 OrthoFinder output from all 47 species
AT2G45800 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
AT3G61230 No alias GATA type zinc finger transcription factor family protein 0.02 OrthoFinder output from all 47 species
Adi_g077331 WLIM1 LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Adi_g106595 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Adi_g106596 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g21791 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g27190 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene10089.t1 WLIM1, Aspi01Gene10089 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene19745.t1 Aspi01Gene19745 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene20213.t1 Aspi01Gene20213 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene62649.t1 WLIM1, Aspi01Gene62649 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g10082 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.07G010100.1 Ceric.07G010100 LIM-type transcription factor & original description:... 0.04 OrthoFinder output from all 47 species
Dac_g13344 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g39322 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g39812 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g14000 No alias LIM-type transcription factor & original description: none 0.07 OrthoFinder output from all 47 species
GSVIVT01007812001 WLIM1 RNA biosynthesis.transcriptional activation.LIM... 0.04 OrthoFinder output from all 47 species
LOC_Os02g42820.1 LOC_Os02g42820 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
LOC_Os04g45010.1 LOC_Os04g45010 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
LOC_Os12g32620.1 WLIM1, LOC_Os12g32620 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Len_g14961 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g05819 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
MA_10428887g0010 No alias transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
MA_104604g0010 WLIM1 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Msp_g05020 No alias LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Nbi_g08756 WLIM1 LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g21254 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ore_g16712 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g19717 No alias LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g55548 WLIM1 LIM-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g04414 WLIM1 LIM-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g16596 No alias LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Smo229974 No alias RNA biosynthesis.transcriptional activation.LIM... 0.04 OrthoFinder output from all 47 species
Solyc03g114000.3.1 WLIM1, Solyc03g114000 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Spa_g01071 No alias LIM-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g53439 No alias LIM-type transcription factor & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g04312 No alias LIM-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e015234_P001 Zm00001e015234 transcription factor (LIM) 0.02 OrthoFinder output from all 47 species
Zm00001e018310_P001 WLIM1, Zm00001e018310 transcription factor (LIM) 0.03 OrthoFinder output from all 47 species
Zm00001e023098_P001 Zm00001e023098 transcription factor (LIM) 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003779 actin binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR001781 Znf_LIM 108 163
IPR001781 Znf_LIM 10 65
No external refs found!