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  5. Als_g01906

Als_g01906 (EMB2776, LIS)


Aliases : EMB2776, LIS

Description : component *(PRPF4) of spliceosomal U4/U6 snRNP & original description: none


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01906
Cluster HCCA: Cluster_201

Target Alias Description ECC score Gene Family Method Actions
Adi_g080387 No alias component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
Cba_g10893 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species
Ceric.09G088700.1 EMB2776, LIS,... component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004784 superoxide dismutase activity IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
MF GO:0008374 O-acyltransferase activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 386 423
IPR001680 WD40_repeat 434 465
IPR001680 WD40_repeat 555 591
IPR001680 WD40_repeat 473 507
IPR001680 WD40_repeat 514 550
IPR001680 WD40_repeat 315 340
IPR001680 WD40_repeat 347 382
IPR014906 PRP4-like 175 202
No external refs found!