Als_g01903 (CBF5, AtCBF5, NAP57, AtNAP57)

Aliases : CBF5, AtCBF5, NAP57, AtNAP57

Description : pseudouridine synthase component *(Nap57/CBF5) of H/ACA snoRNP RNA pseudouridylation complex & original description: none

Gene families : OG0004128 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004128_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g01903

Target	Alias	Description	ECC score	Gene Family Method
Cpa\|evm.model.tig00000553.10	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.02	OrthoFinder output from all 47 species
Cre03.g172950	CBF5, AtCBF5,...	RNA processing.RNA modification.pseudouridylation.H/ACA...	0.01	OrthoFinder output from all 47 species
Dcu_g11724	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	OrthoFinder output from all 47 species
Gb_34541	CBF5, AtCBF5,...	pseudouridine synthase component Nap57/CBF5 of H/ACA...	0.02	OrthoFinder output from all 47 species
Lfl_g10584	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.02	OrthoFinder output from all 47 species
Msp_g43760	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	OrthoFinder output from all 47 species
Ppi_g35999	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species
Sam_g17675	No alias	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.04	OrthoFinder output from all 47 species
Spa_g05917	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.05	OrthoFinder output from all 47 species
Tin_g32083	CBF5, AtCBF5,...	pseudouridine synthase component *(Nap57/CBF5) of H/ACA...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005515	protein binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR012960	Dyskerin-like	57	114
IPR002478	PUA	305	377
IPR032819	TruB_C	235	301
IPR002501	PsdUridine_synth_N	118	234

External Links

No external refs found!