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  5. Als_g01729

Als_g01729 (SNX1, ATSNX1)


Aliases : SNX1, ATSNX1

Description : regulatory factor SNX1 of Retromer protein recycling complex & original description: none


Gene families : OG0003446 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003446_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01729

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00040p00113530 SNX1, ATSNX1,... Vesicle trafficking.endomembrane trafficking.protein... 0.03 OrthoFinder output from all 47 species
Ceric.06G061300.1 SNX1, ATSNX1,... regulatory factor SNX1 of Retromer protein recycling... 0.05 OrthoFinder output from all 47 species
GSVIVT01033883001 SNX1, ATSNX1 Vesicle trafficking.endomembrane trafficking.protein... 0.03 OrthoFinder output from all 47 species
Ore_g20763 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Ppi_g40448 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species
Solyc09g010130.4.1 SNX1, ATSNX1,... component SNX1 of Retromer protein recycling complex 0.04 OrthoFinder output from all 47 species
Tin_g06008 SNX1, ATSNX1 regulatory factor SNX1 of Retromer protein recycling... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0035091 phosphatidylinositol binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0032182 ubiquitin-like protein binding IEP HCCA
MF GO:0043130 ubiquitin binding IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:1990380 K48-linked deubiquitinase activity IEP HCCA
InterPro domains Description Start Stop
IPR001683 PX_dom 59 136
IPR015404 Vps5_C 184 395
No external refs found!