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  5. Als_g01205

Als_g01205 (ATCPSF160, CPSF160)


Aliases : ATCPSF160, CPSF160

Description : component *(CPSF160/Yhh1) of Cleavage and Polyadenylation Specificity Factor (CPSF) complex & original description: none


Gene families : OG0003336 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003336_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01205

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00041p00037520 ATCPSF160,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
AT5G51660 ATCPSF160, CPSF160 cleavage and polyadenylation specificity factor 160 0.04 OrthoFinder output from all 47 species
Ala_g19211 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Aop_g06976 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aspi01Gene55705.t1 ATCPSF160,... not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0079.g038419 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Ceric.05G035200.1 ATCPSF160,... component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Dac_g14965 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Dcu_g19520 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
GSVIVT01018506001 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.04 OrthoFinder output from all 47 species
LOC_Os04g18010.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
MA_10435523g0020 ATCPSF160, CPSF160 Cleavage and polyadenylation specificity factor subunit... 0.03 OrthoFinder output from all 47 species
Nbi_g12582 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ore_g06583 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Ore_g34270 ATCPSF160, CPSF160 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g12638 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Smo82277 ATCPSF160, CPSF160 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
Solyc03g007100.3.1 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Spa_g06166 ATCPSF160, CPSF160 component *(CPSF160/Yhh1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Zm00001e008515_P003 ATCPSF160,... component CPSF160/Yhh1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000151 ubiquitin ligase complex IEP HCCA
CC GO:0000152 nuclear ubiquitin ligase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005680 anaphase-promoting complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016151 nickel cation binding IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR004871 Cleavage/polyA-sp_fac_asu_C 1092 1413
IPR018846 Cleavage/polyA-sp_fac_asu_N 145 712
No external refs found!