Als_g01185

Description : exoribonuclease *(RRP6L) & original description: none

Gene families : OG0002027 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002027_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g01185

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00004p00111480	evm_27.TU.AmTr_v1...	RNA processing.RNA decay.exosome complex.associated...	0.02	OrthoFinder output from all 47 species
AT2G32415	No alias	Polynucleotidyl transferase, ribonuclease H fold protein...	0.02	OrthoFinder output from all 47 species
AT5G35910	No alias	Polynucleotidyl transferase, ribonuclease H fold protein...	0.03	OrthoFinder output from all 47 species
Adi_g023610	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.03G064000.1	Ceric.03G064000	exoribonuclease *(RRP6L) & original description:...	0.06	OrthoFinder output from all 47 species
Dcu_g13373	No alias	exoribonuclease *(RRP6L) & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g36294	No alias	exoribonuclease *(RRP6L) & original description: none	0.05	OrthoFinder output from all 47 species
GSVIVT01029953001	No alias	RNA processing.RNA decay.exosome complex.associated...	0.04	OrthoFinder output from all 47 species
Msp_g23954	No alias	exoribonuclease *(RRP6L) & original description: none	0.03	OrthoFinder output from all 47 species
Smo84661	No alias	RNA processing.RNA decay.exosome complex.associated...	0.03	OrthoFinder output from all 47 species
Solyc10g018520.1.1	Solyc10g018520	exoribonuclease (RRP6L)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000176	nuclear exosome (RNase complex)	IEA	Interproscan
CC	GO:0000178	exosome (RNase complex)	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1905354	exoribonuclease complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
BP	GO:0006352	DNA-templated transcription initiation	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0032784	regulation of DNA-templated transcription elongation	IEP	HCCA
BP	GO:0032786	positive regulation of DNA-templated transcription, elongation	IEP	HCCA
BP	GO:0032968	positive regulation of transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0034243	regulation of transcription elongation by RNA polymerase II	IEP	HCCA
BP	GO:0045893	positive regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0045944	positive regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051254	positive regulation of RNA metabolic process	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
BP	GO:1902680	positive regulation of RNA biosynthetic process	IEP	HCCA
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002121	HRDC_dom	473	540
IPR002562	3'-5'_exonuclease_dom	255	421
IPR012588	Exosome-assoc_fac_Rrp6_N	34	114

External Links

No external refs found!

Als_g01185

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation