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  5. Als_g01096

Als_g01096


Description : regulatory factor *(TZF) of mRNA stress granule formation & original description: none


Gene families : OG0000156 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000156_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g01096
Cluster HCCA: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
AT2G40140 SZF2, ATSZF2, ZFAR1, CZF1 zinc finger (CCCH-type) family protein 0.03 OrthoFinder output from all 47 species
AT3G55980 ATSZF1, SZF1 salt-inducible zinc finger 1 0.02 OrthoFinder output from all 47 species
Adi_g016518 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ala_g17274 No alias regulatory factor *(TZF) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Als_g10851 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aob_g07949 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aop_g14316 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Aspi01Gene15677.t1 Aspi01Gene15677 regulatory factor *(TZF) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Azfi_s0203.g057679 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Cba_g04032 No alias regulatory factor *(TZF) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Ceric.02G081600.1 Ceric.02G081600 regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ceric.05G100900.1 Ceric.05G100900 regulatory factor *(TZF) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Dac_g02872 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Dac_g12058 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Dcu_g07562 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Dcu_g16518 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Ehy_g09166 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
GSVIVT01024728001 No alias RNA biosynthesis.transcriptional activation.C3H zinc... 0.03 OrthoFinder output from all 47 species
GSVIVT01032807001 SZF2, ATSZF2, ZFAR1, CZF1 RNA biosynthesis.transcriptional activation.C3H zinc... 0.02 OrthoFinder output from all 47 species
Lfl_g28211 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g02332 No alias regulatory factor *(TZF) of mRNA stress granule... 0.05 OrthoFinder output from all 47 species
Nbi_g05906 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Nbi_g10809 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pnu_g20981 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pnu_g24839 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Pp3c16_20450V3.1 Pp3c16_20450 No annotation 0.01 OrthoFinder output from all 47 species
Ppi_g31009 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0008.g004066 No alias regulatory factor *(TZF) of mRNA stress granule... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017049 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Sam_g12541 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Sam_g49873 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Solyc06g082010.4.1 Solyc06g082010 mRNA-binding regulatory factor (TZF) 0.03 OrthoFinder output from all 47 species
Spa_g17916 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Spa_g24103 ATTZF1, ATCTH regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Spa_g31285 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Spa_g43052 No alias regulatory factor *(TZF) of mRNA stress granule... 0.03 OrthoFinder output from all 47 species
Tin_g02786 No alias regulatory factor *(TZF) of mRNA stress granule... 0.02 OrthoFinder output from all 47 species
Zm00001e005347_P001 Zm00001e005347 mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species
Zm00001e027454_P001 ATTZF1, ATCTH,... mRNA-binding regulatory factor (TZF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004180 carboxypeptidase activity IEP HCCA
MF GO:0004185 serine-type carboxypeptidase activity IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008238 exopeptidase activity IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
MF GO:0070008 serine-type exopeptidase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 61 138
IPR000571 Znf_CCCH 322 342
No external refs found!