Als_g00983

Description : not classified & original description: none

Gene families : OG0005612 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005612_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Als_g00983

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00065p00048130	evm_27.TU.AmTr_v1...	DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre12.g526850	No alias	DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana	0.01	OrthoFinder output from all 47 species
LOC_Os03g51900.1	LOC_Os03g51900	DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Mp7g04610.1	No alias	DEAD-box ATP-dependent RNA helicase 16 OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Ore_g07475	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g57111	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo440996	No alias	DEAD-box ATP-dependent RNA helicase 16 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Tin_g11405	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	256	408
IPR011545	DEAD/DEAH_box_helicase_dom	40	216

External Links

No external refs found!