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  5. Als_g00483

Als_g00483 (NFD03, HMGB3, NFD3)


Aliases : NFD03, HMGB3, NFD3

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Als_g00483
Cluster HCCA: Cluster_50

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00014p00061870 evm_27.TU.AmTr_v1... High mobility group B protein 14 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
AMTR_s00093p00057150 evm_27.TU.AmTr_v1... High mobility group B protein 6 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
AMTR_s00171p00070550 HMGB6,... High mobility group B protein 7 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
AT4G11080 No alias HMG (high mobility group) box protein 0.05 OrthoFinder output from all 47 species
AT4G23800 No alias HMG (high mobility group) box protein 0.05 OrthoFinder output from all 47 species
Adi_g007317 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Adi_g080941 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Adi_g080942 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Adi_g124291 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aev_g39525 No alias DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aev_g40545 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Ala_g04363 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Ala_g24042 No alias not classified & original description: none 0.12 OrthoFinder output from all 47 species
Ala_g28166 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Aop_g06071 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Aop_g13958 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aop_g23124 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Aop_g38218 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Aop_g48668 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene15766.t1 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Aspi01Gene15766.t2 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Aspi01Gene22053.t1 HMGB6, Aspi01Gene22053 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene26055.t1 NFD03, HMGB3,... DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Cba_g10021 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Cba_g11082 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Ceric.03G026600.1 HMGB6, Ceric.03G026600 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Cre06.g261450 ATHMG, HMG, SSRP1, NFD No description available 0.02 OrthoFinder output from all 47 species
Cre16.g672300 No alias No description available 0.01 OrthoFinder output from all 47 species
Dac_g07598 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Dac_g12415 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.03 OrthoFinder output from all 47 species
Dac_g20756 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.04 OrthoFinder output from all 47 species
Dcu_g36188 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Dcu_g40639 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
GSVIVT01019504001 No alias High mobility group B protein 13 OS=Arabidopsis thaliana 0.12 OrthoFinder output from all 47 species
GSVIVT01034361001 HMGB6 High mobility group B protein 7 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_00374 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.05 OrthoFinder output from all 47 species
LOC_Os02g15810.1 LOC_Os02g15810 High mobility group B protein 13 OS=Arabidopsis thaliana... 0.11 OrthoFinder output from all 47 species
Len_g04502 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Len_g16826 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Len_g21317 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.08 OrthoFinder output from all 47 species
Len_g30940 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Lfl_g05840 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Lfl_g21733 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Lfl_g24536 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.13 OrthoFinder output from all 47 species
MA_10436440g0030 NFD03, HMGB3, NFD3 no hits & (original description: none) 0.04 OrthoFinder output from all 47 species
MA_783123g0010 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
MA_86565g0010 HMGB6 no hits & (original description: none) 0.06 OrthoFinder output from all 47 species
Mp2g12330.1 No alias High mobility group B protein 6 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Msp_g01263 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Msp_g38531 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Nbi_g06088 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.09 OrthoFinder output from all 47 species
Nbi_g12748 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Nbi_g22023 NFD4, HMGB4, NFD04 DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Ore_g42111 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0014.g006223 NFD2, HMG BETA... not classified & original description: CDS=1-750 0.02 OrthoFinder output from all 47 species
Sam_g17368 No alias DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Sam_g27294 No alias DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Sam_g31468 No alias DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Sam_g36464 No alias DNA bending architectural protein *(HMG-B) & original... 0.08 OrthoFinder output from all 47 species
Sam_g40555 No alias DNA bending architectural protein *(HMG-B) & original... 0.08 OrthoFinder output from all 47 species
Solyc04g008820.3.1 HMGB6, Solyc04g008820 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.04 OrthoFinder output from all 47 species
Solyc08g082070.3.1 Solyc08g082070 High mobility group B protein 6 OS=Arabidopsis thaliana... 0.06 OrthoFinder output from all 47 species
Spa_g04270 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.05 OrthoFinder output from all 47 species
Spa_g10432 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Spa_g15059 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.07 OrthoFinder output from all 47 species
Tin_g00083 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.09 OrthoFinder output from all 47 species
Tin_g03032 HMGB6 DNA bending architectural protein *(HMG-B) & original... 0.1 OrthoFinder output from all 47 species
Tin_g45467 NFD2, HMG BETA... DNA bending architectural protein *(HMG-B) & original... 0.08 OrthoFinder output from all 47 species
Zm00001e010305_P004 NFD2, HMG BETA... HMG1/2-like protein OS=Ipomoea nil (sp|p40619|hmgl_iponi : 113.0) 0.04 OrthoFinder output from all 47 species
Zm00001e014266_P001 Zm00001e014266 High mobility group B protein 6 OS=Arabidopsis thaliana... 0.09 OrthoFinder output from all 47 species
Zm00001e024274_P002 HMGB6, Zm00001e024274 High mobility group B protein 7 OS=Arabidopsis thaliana... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 26 95
No external refs found!