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  5. Pnu_g10254

Pnu_g10254 (CRB, HIP1.3, CSP41B)


Aliases : CRB, HIP1.3, CSP41B

Description : endoribonuclease *(CSP41) & original description: none


Gene families : OG0001864 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001864_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g10254
Cluster HCCA: Cluster_109

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00003p00211760 CRB, HIP1.3,... RNA processing.organelle machineries.ribonuclease... 0.09 OrthoFinder output from all 47 species
AMTR_s00025p00246210 CSP41A,... RNA processing.organelle machineries.ribonuclease... 0.09 OrthoFinder output from all 47 species
AT1G09340 CRB, HIP1.3, CSP41B chloroplast RNA binding 0.12 OrthoFinder output from all 47 species
AT3G63140 CSP41A chloroplast stem-loop binding protein of 41 kDa 0.11 OrthoFinder output from all 47 species
Adi_g006651 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Adi_g020154 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g044321 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g02158 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Aev_g03824 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g04885 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Ala_g12109 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g12366 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Als_g45562 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g01615 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Aob_g11448 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g13529 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Aop_g69969 CSP41A endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Aspi01Gene42964.t1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0699.g082607 CSP41A endoribonuclease *(CSP41) & original description: CDS=152-1396 0.05 OrthoFinder output from all 47 species
Azfi_s0754.g085340 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=1-1245 0.09 OrthoFinder output from all 47 species
Azfi_s1450.g103210 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: CDS=130-1254 0.03 OrthoFinder output from all 47 species
Cba_g10854 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Cba_g10933 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.09 OrthoFinder output from all 47 species
Ceric.11G048000.1 CRB, HIP1.3,... endoribonuclease *(CSP41) & original description:... 0.1 OrthoFinder output from all 47 species
Ceric.26G018800.1 CSP41A, Ceric.26G018800 endoribonuclease *(CSP41) & original description:... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021181.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021720.14 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Cre10.g435800 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.04 OrthoFinder output from all 47 species
Cre10.g440050 CSP41A RNA processing.organelle machineries.ribonuclease... 0.05 OrthoFinder output from all 47 species
Dac_g08562 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Dac_g14747 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g01117 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Dcu_g02729 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Dde_g02854 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Dde_g14746 CSP41A endoribonuclease *(CSP41) & original description: none 0.12 OrthoFinder output from all 47 species
Ehy_g01176 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g06718 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01011082001 CSP41A RNA processing.organelle machineries.ribonuclease... 0.1 OrthoFinder output from all 47 species
GSVIVT01031272001 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.09 OrthoFinder output from all 47 species
Gb_01706 CSP41A endoribonuclease (CSP41) 0.05 OrthoFinder output from all 47 species
Gb_26565 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.05 OrthoFinder output from all 47 species
Gb_37146 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.04 OrthoFinder output from all 47 species
LOC_Os07g11110.1 CSP41A, LOC_Os07g11110 endoribonuclease (CSP41) 0.06 OrthoFinder output from all 47 species
LOC_Os12g23180.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species
Len_g03236 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Len_g13543 CSP41A endoribonuclease *(CSP41) & original description: none 0.11 OrthoFinder output from all 47 species
Lfl_g01195 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Lfl_g12178 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
MA_115470g0010 CSP41A Chloroplast stem-loop binding protein of 41 kDa a,... 0.09 OrthoFinder output from all 47 species
MA_196108g0010 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species
MA_307070g0010 CSP41A endoribonuclease (CSP41) 0.08 OrthoFinder output from all 47 species
MA_327596g0010 CRB, HIP1.3, CSP41B no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp1g11680.1 CRB, HIP1.3, CSP41B endoribonuclease (CSP41) 0.14 OrthoFinder output from all 47 species
Mp1g11690.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp6g11330.1 CSP41A endoribonuclease (CSP41) 0.1 OrthoFinder output from all 47 species
Msp_g23904 CSP41A endoribonuclease *(CSP41) & original description: none 0.09 OrthoFinder output from all 47 species
Msp_g36515 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g04194 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Nbi_g07510 CSP41A endoribonuclease *(CSP41) & original description: none 0.1 OrthoFinder output from all 47 species
Ore_g07930 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g19880 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Ore_g31893 CSP41A endoribonuclease *(CSP41) & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g14125 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g01983 CSP41A endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Ppi_g10001 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Sacu_v1.1_s0076.g017534 CSP41A endoribonuclease *(CSP41) & original description: CDS=1450-2700 0.05 OrthoFinder output from all 47 species
Sam_g04675 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Sam_g11377 No alias endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g19736 No alias endoribonuclease *(CSP41) & original description: none 0.07 OrthoFinder output from all 47 species
Sam_g22990 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo107618 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.08 OrthoFinder output from all 47 species
Smo133157 CSP41A RNA processing.organelle machineries.ribonuclease... 0.07 OrthoFinder output from all 47 species
Smo185868 CSP41A RNA processing.organelle machineries.ribonuclease... 0.07 OrthoFinder output from all 47 species
Smo228849 CRB, HIP1.3, CSP41B RNA processing.organelle machineries.ribonuclease... 0.05 OrthoFinder output from all 47 species
Solyc06g073260.3.1 CRB, HIP1.3,... endoribonuclease (CSP41) 0.11 OrthoFinder output from all 47 species
Solyc09g065180.3.1 CSP41A, Solyc09g065180 endoribonuclease (CSP41) 0.1 OrthoFinder output from all 47 species
Spa_g10009 CSP41A endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Spa_g12780 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.08 OrthoFinder output from all 47 species
Tin_g00898 CRB, HIP1.3, CSP41B endoribonuclease *(CSP41) & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g08097 CSP41A endoribonuclease *(CSP41) & original description: none 0.04 OrthoFinder output from all 47 species
Zm00001e029297_P001 CRB, HIP1.3,... endoribonuclease (CSP41) 0.05 OrthoFinder output from all 47 species
Zm00001e033112_P001 CSP41A, Zm00001e033112 endoribonuclease (CSP41) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005261 monoatomic cation channel activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
BP GO:0006164 purine nucleotide biosynthetic process IEP HCCA
BP GO:0006754 ATP biosynthetic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009141 nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009142 nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009144 purine nucleoside triphosphate metabolic process IEP HCCA
BP GO:0009145 purine nucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009152 purine ribonucleotide biosynthetic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009199 ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009201 ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009205 purine ribonucleoside triphosphate metabolic process IEP HCCA
BP GO:0009206 purine ribonucleoside triphosphate biosynthetic process IEP HCCA
BP GO:0009260 ribonucleotide biosynthetic process IEP HCCA
CC GO:0009521 photosystem IEP HCCA
CC GO:0009522 photosystem I IEP HCCA
CC GO:0009523 photosystem II IEP HCCA
CC GO:0009538 photosystem I reaction center IEP HCCA
CC GO:0009654 photosystem II oxygen evolving complex IEP HCCA
MF GO:0015078 proton transmembrane transporter activity IEP HCCA
MF GO:0015252 proton channel activity IEP HCCA
BP GO:0015979 photosynthesis IEP HCCA
BP GO:0015986 proton motive force-driven ATP synthesis IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
BP GO:0016485 protein processing IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
CC GO:0019898 extrinsic component of membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033178 proton-transporting two-sector ATPase complex, catalytic domain IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) IEP HCCA
BP GO:0046034 ATP metabolic process IEP HCCA
BP GO:0046390 ribose phosphate biosynthetic process IEP HCCA
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
MF GO:0051920 peroxiredoxin activity IEP HCCA
BP GO:0071586 CAAX-box protein processing IEP HCCA
BP GO:0072522 purine-containing compound biosynthetic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
CC GO:1990204 oxidoreductase complex IEP HCCA
InterPro domains Description Start Stop
IPR001509 Epimerase_deHydtase 92 309
No external refs found!