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  5. Pnu_g10107

Pnu_g10107 (MEE32, EMB3004)


Aliases : MEE32, EMB3004

Description : 3-dehydroquinate dehydratase and shikimate dehydrogenase & original description: none


Gene families : OG0001444 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001444_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g10107
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
Ala_g11559 MEE32, EMB3004 3-dehydroquinate dehydratase and shikimate dehydrogenase... 0.02 OrthoFinder output from all 47 species
Als_g11756 MEE32, EMB3004 3-dehydroquinate dehydratase and shikimate dehydrogenase... 0.04 OrthoFinder output from all 47 species
Cba_g39092 MEE32, EMB3004 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g51654 No alias 3-dehydroquinate dehydratase and shikimate dehydrogenase... 0.04 OrthoFinder output from all 47 species
Spa_g50105 MEE32, EMB3004 3-dehydroquinate dehydratase and shikimate dehydrogenase... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003855 3-dehydroquinate dehydratase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005319 lipid transporter activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006869 lipid transport IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
BP GO:0061024 membrane organization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0120009 intermembrane lipid transfer IEP HCCA
MF GO:0120013 lipid transfer activity IEP HCCA
InterPro domains Description Start Stop
IPR041121 SDH_C 480 508
IPR006151 Shikm_DH/Glu-tRNA_Rdtase 360 432
IPR013708 Shikimate_DH-bd_N 245 325
IPR001381 DHquinase_I 9 231
No external refs found!