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  5. Pnu_g09924

Pnu_g09924 (AMY3, ATAMY3)


Aliases : AMY3, ATAMY3

Description : alpha amylase & original description: none


Gene families : OG0000515 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000515_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g09924
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00183740 AMY2, ATAMY2,... Carbohydrate metabolism.starch... 0.03 OrthoFinder output from all 47 species
Azfi_s0015.g013850 AMY3, ATAMY3 alpha amylase & original description: CDS=266-3262 0.03 OrthoFinder output from all 47 species
Cre08.g362450 AMY2, ATAMY2 Carbohydrate metabolism.starch... 0.02 OrthoFinder output from all 47 species
Ehy_g02577 AMY2, ATAMY2 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
LOC_Os06g49970.2 AMY1, ATAMY1,... alpha amylase 0.02 OrthoFinder output from all 47 species
Lfl_g24732 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species
MA_30833g0010 AMY1, ATAMY1 alpha amylase 0.02 OrthoFinder output from all 47 species
MA_30833g0020 AMY1, ATAMY1 alpha amylase 0.03 OrthoFinder output from all 47 species
MA_336273g0010 AMY1, ATAMY1 alpha amylase 0.02 OrthoFinder output from all 47 species
Pir_g20513 AMY3, ATAMY3 alpha amylase & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g41652 AMY1, ATAMY1 alpha amylase & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004497 monooxygenase activity IEP HCCA
MF GO:0004645 1,4-alpha-oligoglucan phosphorylase activity IEP HCCA
MF GO:0005506 iron ion binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
MF GO:0008184 glycogen phosphorylase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0020037 heme binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
InterPro domains Description Start Stop
IPR012850 A-amylase_bs_C 936 997
IPR006047 Glyco_hydro_13_cat_dom 631 914
No external refs found!