AMTR_s00040p00131380 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.98

Description : Multi-process regulation.circadian clock.morning element regulation.LWD activation factor


Gene families : OG_01_0001679 (Archaeplastida) Phylogenetic Tree(s): OG_01_0001679_tree ,
OG_02_0001586 (LandPlants) Phylogenetic Tree(s): OG_02_0001586_tree ,
OG_03_0001588 (SeedPlants) Phylogenetic Tree(s): OG_03_0001588_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00131380
Cluster HCCA: Cluster_80

Target Alias Description ECC score Gene Family Method Actions
AT3G26640 LWD2 Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
LOC_Os02g32430.1 No alias WD repeat-containing protein LWD1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g45810.1 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.04 Archaeplastida
MA_637135g0010 No alias LWD circadian clock activation factor 0.03 Archaeplastida
Smo270223 No alias Multi-process regulation.circadian clock.morning element... 0.02 Archaeplastida
Solyc03g097340.1.1 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.1 Archaeplastida
Zm00001e015450_P001 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g32430.1 No alias WD repeat-containing protein LWD1 OS=Arabidopsis... 0.02 LandPlants
LOC_Os02g45810.1 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.03 LandPlants
Smo270223 No alias Multi-process regulation.circadian clock.morning element... 0.02 LandPlants
Solyc03g097340.1.1 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.08 LandPlants
Zm00001e015450_P001 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.02 LandPlants
Solyc03g097340.1.1 No alias Protein TRANSPARENT TESTA GLABRA 1 OS=Arabidopsis... 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001680 WD40_repeat 165 198
IPR001680 WD40_repeat 252 289
No external refs found!