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  5. AMTR_s00040p00040910

AMTR_s00040p00040910 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00040.18

Description : RNA biosynthesis.transcriptional activation.TUB transcription factor


Gene families : OG_01_0000335 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000335_tree ,
OG_02_0000295 (LandPlants) Phylogenetic Tree(s): OG_02_0000295_tree ,
OG_03_0000341 (SeedPlants) Phylogenetic Tree(s): OG_03_0000341_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00040p00040910
Cluster HCCA: Cluster_146

Target Alias Description ECC score Gene Family Method Actions
AT1G47270 TLP6, AtTLP6 tubby like protein 6 0.02 Archaeplastida
AT1G76900 AtTLP1, TLP1 tubby like protein 1 0.03 Archaeplastida
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.05 Archaeplastida
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.06 Archaeplastida
Gb_21935 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.02 Archaeplastida
LOC_Os02g47640.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os05g36190.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os05g48670.1 No alias transcription factor (TUB) 0.03 Archaeplastida
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.04 Archaeplastida
LOC_Os12g06630.2 No alias transcription factor (TUB) 0.02 Archaeplastida
MA_132704g0010 No alias transcription factor (TUB) 0.04 Archaeplastida
Pp3c24_19540V3.1 No alias tubby like protein 3 0.02 Archaeplastida
Smo83983 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Smo85745 No alias RNA biosynthesis.transcriptional activation.TUB... 0.02 Archaeplastida
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Solyc07g062390.4.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Solyc09g074510.3.1 No alias transcription factor (TUB) 0.02 Archaeplastida
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e007472_P001 No alias transcription factor (TUB) 0.04 Archaeplastida
Zm00001e023326_P001 No alias transcription factor (TUB) 0.03 Archaeplastida
Zm00001e039448_P004 No alias transcription factor (TUB) 0.03 Archaeplastida
AT1G47270 TLP6, AtTLP6 tubby like protein 6 0.02 LandPlants
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.04 LandPlants
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 LandPlants
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.01 LandPlants
LOC_Os05g36190.1 No alias transcription factor (TUB) 0.02 LandPlants
LOC_Os05g48670.1 No alias transcription factor (TUB) 0.02 LandPlants
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.03 LandPlants
MA_132704g0010 No alias transcription factor (TUB) 0.02 LandPlants
Pp3c20_2160V3.1 No alias tubby like protein 3 0.01 LandPlants
Pp3c24_19540V3.1 No alias tubby like protein 3 0.01 LandPlants
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.02 LandPlants
Solyc07g062390.4.1 No alias transcription factor (TUB) 0.03 LandPlants
Solyc09g074510.3.1 No alias transcription factor (TUB) 0.02 LandPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.03 LandPlants
Zm00001e023326_P001 No alias transcription factor (TUB) 0.02 LandPlants
Zm00001e039448_P004 No alias transcription factor (TUB) 0.03 LandPlants
GSVIVT01029701001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 SeedPlants
GSVIVT01034528001 No alias RNA biosynthesis.transcriptional activation.TUB... 0.03 SeedPlants
Gb_06851 No alias transcription factor (TUB) 0.01 SeedPlants
LOC_Os01g64700.2 No alias transcription factor (TUB) 0.01 SeedPlants
LOC_Os05g36190.1 No alias transcription factor (TUB) 0.01 SeedPlants
LOC_Os08g01290.5 No alias transcription factor (TUB) 0.03 SeedPlants
Solyc02g085130.4.1 No alias transcription factor (TUB) 0.01 SeedPlants
Solyc09g074510.3.1 No alias transcription factor (TUB) 0.02 SeedPlants
Solyc10g046970.2.1 No alias transcription factor (TUB) 0.03 SeedPlants
Zm00001e019166_P001 No alias transcription factor (TUB) 0.02 SeedPlants
Zm00001e039448_P004 No alias transcription factor (TUB) 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001810 F-box_dom 52 101
IPR000007 Tubby_C 117 478
No external refs found!