AMTR_s00039p00212570 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.183

Description : RNA processing.RNA splicing.spliceosome-associated non-snRNP MOS4-associated complex (MAC).core components.MAC3 component


Gene families : OG_01_0003024 (Archaeplastida) Phylogenetic Tree(s): OG_01_0003024_tree ,
OG_02_0003757 (LandPlants) Phylogenetic Tree(s): OG_02_0003757_tree ,
OG_03_0006760 (SeedPlants) Phylogenetic Tree(s): OG_03_0006760_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00212570
Cluster HCCA: Cluster_225

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00001501.3 No alias Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Cpa|evm.model.tig00001501.4 No alias Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Cre02.g073650 No alias RNA processing.RNA splicing.spliceosome-associated... 0.01 Archaeplastida
LOC_Os10g32880.1 No alias component MAC3 of non-snRNP MOS4-associated complex 0.05 Archaeplastida
MA_20260g0010 No alias component MAC3 of non-snRNP MOS4-associated complex 0.04 Archaeplastida
Pp3c5_9900V3.1 No alias MOS4-associated complex 3A 0.02 Archaeplastida
Pp3c6_19920V3.1 No alias MOS4-associated complex 3A 0.03 Archaeplastida
Solyc09g090660.3.1 No alias component MAC3 of non-snRNP MOS4-associated complex 0.04 Archaeplastida
AT1G04510 MAC3A MOS4-associated complex 3A 0.02 LandPlants
LOC_Os10g32880.1 No alias component MAC3 of non-snRNP MOS4-associated complex 0.05 LandPlants
MA_20260g0010 No alias component MAC3 of non-snRNP MOS4-associated complex 0.04 LandPlants
Pp3c5_9900V3.1 No alias MOS4-associated complex 3A 0.02 LandPlants
Pp3c6_19920V3.1 No alias MOS4-associated complex 3A 0.03 LandPlants
Solyc09g090660.3.1 No alias component MAC3 of non-snRNP MOS4-associated complex 0.05 LandPlants
Zm00001e004625_P001 No alias component MAC3 of non-snRNP MOS4-associated complex 0.02 LandPlants
AT1G04510 MAC3A MOS4-associated complex 3A 0.02 SeedPlants
LOC_Os10g32880.1 No alias component MAC3 of non-snRNP MOS4-associated complex 0.05 SeedPlants
MA_20260g0010 No alias component MAC3 of non-snRNP MOS4-associated complex 0.04 SeedPlants
Solyc09g090660.3.1 No alias component MAC3 of non-snRNP MOS4-associated complex 0.04 SeedPlants
Zm00001e004625_P001 No alias component MAC3 of non-snRNP MOS4-associated complex 0.01 SeedPlants
Zm00001e012723_P001 No alias component MAC3 of non-snRNP MOS4-associated complex 0.01 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR013915 Pre-mRNA_splic_Prp19 65 132
IPR001680 WD40_repeat 257 293
IPR001680 WD40_repeat 398 432
IPR001680 WD40_repeat 494 520
IPR001680 WD40_repeat 302 339
No external refs found!