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  5. Pnu_g07543

Pnu_g07543


Description : scaffold nucleoporin of nuclear pore complex *(NUP188) & original description: none


Gene families : OG0006216 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006216_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: Pnu_g07543

Target Alias Description ECC score Gene Family Method Actions
Ala_g14349 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
Als_g16173 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.04 OrthoFinder output from all 47 species
Ceric.17G079700.1 Ceric.17G079700 scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.03 OrthoFinder output from all 47 species
Dde_g13684 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.04 OrthoFinder output from all 47 species
Len_g14722 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.02 OrthoFinder output from all 47 species
Ppi_g48554 No alias scaffold nucleoporin of nuclear pore complex *(NUP188) &... 0.02 OrthoFinder output from all 47 species
Solyc11g039880.2.1 Solyc11g039880 NUP188 scaffold nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004055 argininosuccinate synthase activity IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0016053 organic acid biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0044283 small molecule biosynthetic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018864 Nucleoporin_Nup188_N 61 790
No external refs found!