Pnu_g06800

Description : sRNA cargo-loading helicase *(RH11/37) of extracellular vesicle trafficking & original description: none

Gene families : OG0002081 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002081_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pnu_g06800

Target	Alias	Description	ECC score	Gene Family Method
Aev_g21917	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.03	OrthoFinder output from all 47 species
LOC_Os11g38670.1	LOC_Os11g38670	DEAD-box ATP-dependent RNA helicase 52C OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Lfl_g34759	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.04	OrthoFinder output from all 47 species
MA_137324g0010	No alias	DEAD-box ATP-dependent RNA helicase 37 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
MA_181586g0010	No alias	DEAD-box ATP-dependent RNA helicase 52B OS=Oryza sativa...	0.03	OrthoFinder output from all 47 species
Ppi_g30273	No alias	sRNA cargo-loading helicase *(RH11/37) of extracellular...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
MF	GO:0009678	pyrophosphate hydrolysis-driven proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
BP	GO:0016226	iron-sulfur cluster assembly	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
BP	GO:0031163	metallo-sulfur cluster assembly	IEP	HCCA
MF	GO:0042625	ATPase-coupled ion transmembrane transporter activity	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
MF	GO:0044769	ATPase activity, coupled to transmembrane movement of ions, rotational mechanism	IEP	HCCA
MF	GO:0046961	proton-transporting ATPase activity, rotational mechanism	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	202	385
IPR001650	Helicase_C	441	538

External Links

No external refs found!