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  5. Pnu_g06737

Pnu_g06737 (ATL2, TL2)


Aliases : ATL2, TL2

Description : RING-H2-class ATL-subclass E3 ubiquitin ligase & original description: none


Gene families : OG0000008 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g06737

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267830 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.03 OrthoFinder output from all 47 species
AMTR_s00008p00185200 ATL6,... Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
AT1G15100 RHA2A RING-H2 finger A2A 0.04 OrthoFinder output from all 47 species
AT1G35330 No alias RING/U-box superfamily protein 0.02 OrthoFinder output from all 47 species
AT4G00305 No alias RING/U-box superfamily protein 0.04 OrthoFinder output from all 47 species
AT4G11360 RHA1B RING-H2 finger A1B 0.04 OrthoFinder output from all 47 species
AT5G53110 No alias RING/U-box superfamily protein 0.05 OrthoFinder output from all 47 species
Aev_g01262 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Aop_g12490 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Aspi01Gene52668.t1 ATL2, TL2,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Aspi01Gene65294.t1 Aspi01Gene65294 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
Azfi_s0061.g035118 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Azfi_s0061.g035127 ATL2, TL2 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Cba_g29676 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Ceric.22G061100.1 ATL63, TL63,... RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.04 OrthoFinder output from all 47 species
Ceric.25G002800.1 Ceric.25G002800 not classified & original description: pacid=50594229... 0.03 OrthoFinder output from all 47 species
Ceric.34G056700.1 Ceric.34G056700 not classified & original description: pacid=50623881... 0.04 OrthoFinder output from all 47 species
Ceric.38G004700.1 Ceric.38G004700 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020684.6 SDIR1 Protein degradation.peptide tagging.Ubiquitin... 0.01 OrthoFinder output from all 47 species
Dac_g14951 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Dde_g25847 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g00845 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.03 OrthoFinder output from all 47 species
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 OrthoFinder output from all 47 species
GSVIVT01012018001 XERICO Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.02 OrthoFinder output from all 47 species
GSVIVT01024698001 ATL2, TL2 Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
GSVIVT01038717001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 OrthoFinder output from all 47 species
LOC_Os02g45390.1 LOC_Os02g45390 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
LOC_Os03g05570.1 LOC_Os03g05570 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
LOC_Os04g37730.1 LOC_Os04g37730 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Lfl_g39385 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_107765g0010 ATL6 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
MA_114175g0010 ATL2, TL2 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_12363g0010 No alias RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
MA_786911g0010 ATL2, TL2 RING-H2-class E3 ligase 0.05 OrthoFinder output from all 47 species
MA_9989900g0010 ATL2, TL2 RING-H2-class E3 ligase 0.03 OrthoFinder output from all 47 species
Msp_g01499 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g10560 BRH1 E3 ubiquitin ligase *(BRH) & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g11149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g26309 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Pir_g55439 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pnu_g17683 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0099.g019562 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.02 OrthoFinder output from all 47 species
Sam_g51254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc03g083460.3.1 Solyc03g083460 RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Solyc09g010650.1.1 Solyc09g010650 RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Spa_g17343 ATL6 RING-H2-class ATL-subclass E3 ubiquitin ligase &... 0.06 OrthoFinder output from all 47 species
Zm00001e009988_P001 ATL6, Zm00001e009988 RING-H2-class E3 ligase 0.02 OrthoFinder output from all 47 species
Zm00001e010029_P001 XERICO, Zm00001e010029 ubiquitin protein ligase (XERICO) 0.02 OrthoFinder output from all 47 species
Zm00001e022781_P001 Zm00001e022781 RING-H2-class E3 ligase 0.07 OrthoFinder output from all 47 species
Zm00001e029032_P001 Zm00001e029032 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e030750_P001 Zm00001e030750 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species
Zm00001e030877_P001 Zm00001e030877 RING-H2-class E3 ligase 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 112 155
No external refs found!