AMTR_s00039p00046970 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00039.17

Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.SUVH2/9 methyl-DNA-binding factor


Gene families : OG_01_0000257 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000257_tree ,
OG_02_0000718 (LandPlants) Phylogenetic Tree(s): OG_02_0000718_tree ,
OG_03_0003509 (SeedPlants) Phylogenetic Tree(s): OG_03_0003509_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00039p00046970
Cluster HCCA: Cluster_259

Target Alias Description ECC score Gene Family Method Actions
AT5G13960 SDG33, SUVH4, KYP SU(VAR)3-9 homolog 4 0.02 Archaeplastida
GSVIVT01013881001 No alias Chromatin organisation.histone modifications.histone... 0.02 Archaeplastida
Gb_41440 No alias class V/Su(var) histone methyltransferase component of... 0.03 Archaeplastida
LOC_Os08g45130.1 No alias class V/Su(var) histone methyltransferase component of... 0.02 Archaeplastida
LOC_Os11g03700.1 No alias class V/Su(var) histone methyltransferase component of... 0.02 Archaeplastida
MA_790260g0010 No alias class V/Su(var) histone methyltransferase component of... 0.03 Archaeplastida
Pp3c2_30830V3.1 No alias SU(VAR)3-9 homolog 6 0.02 Archaeplastida
Solyc03g093700.3.1 No alias class V/Su(var) histone methyltransferase component of... 0.02 Archaeplastida
Zm00001e027327_P003 No alias class V/Su(var) histone methyltransferase component of... 0.02 Archaeplastida
LOC_Os08g45130.1 No alias class V/Su(var) histone methyltransferase component of... 0.02 LandPlants
Solyc09g082050.4.1 No alias class V/Su(var) histone methyltransferase component of... 0.02 LandPlants
Zm00001e027327_P003 No alias class V/Su(var) histone methyltransferase component of... 0.02 LandPlants
LOC_Os08g45130.1 No alias class V/Su(var) histone methyltransferase component of... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0018024 histone-lysine N-methyltransferase activity IEA Interproscan
BP GO:0034968 histone lysine methylation IEA Interproscan
MF GO:0042393 histone binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR007728 Pre-SET_dom 601 698
IPR001214 SET_dom 717 849
IPR003105 SRA_YDG 417 572
No external refs found!