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  5. Pnu_g06238

Pnu_g06238 (TCP-1, ATTCP-1)


Aliases : TCP-1, ATTCP-1

Description : subunit alpha of CCT chaperonin folding complex *(CCT1) & original description: none


Gene families : OG0005794 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005794_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g06238

Target Alias Description ECC score Gene Family Method Actions
Ala_g02078 TCP-1, ATTCP-1 subunit alpha of CCT chaperonin folding complex *(CCT1)... 0.03 OrthoFinder output from all 47 species
Aop_g15544 TCP-1, ATTCP-1 subunit alpha of CCT chaperonin folding complex *(CCT1)... 0.04 OrthoFinder output from all 47 species
Ceric.15G048500.1 TCP-1, ATTCP-1,... subunit alpha of CCT chaperonin folding complex *(CCT1)... 0.03 OrthoFinder output from all 47 species
LOC_Os04g46620.1 TCP-1, ATTCP-1,... CCT1 subunit alpha of CCT chaperonin folding complex 0.02 OrthoFinder output from all 47 species
MA_21256g0010 TCP-1, ATTCP-1 CCT1 subunit alpha of CCT chaperonin folding complex 0.02 OrthoFinder output from all 47 species
Msp_g08277 TCP-1, ATTCP-1 subunit alpha of CCT chaperonin folding complex *(CCT1)... 0.03 OrthoFinder output from all 47 species
Ore_g06833 TCP-1, ATTCP-1 subunit alpha of CCT chaperonin folding complex *(CCT1)... 0.03 OrthoFinder output from all 47 species
Spa_g11137 TCP-1, ATTCP-1 subunit alpha of CCT chaperonin folding complex *(CCT1)... 0.03 OrthoFinder output from all 47 species
Zm00001e023719_P001 TCP-1, ATTCP-1,... CCT1 subunit alpha of CCT chaperonin folding complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000139 Golgi membrane IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005338 nucleotide-sugar transmembrane transporter activity IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015165 pyrimidine nucleotide-sugar transmembrane transporter activity IEP HCCA
BP GO:0015780 nucleotide-sugar transmembrane transport IEP HCCA
BP GO:0015931 nucleobase-containing compound transport IEP HCCA
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
CC GO:0031090 organelle membrane IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
BP GO:0090481 pyrimidine nucleotide-sugar transmembrane transport IEP HCCA
CC GO:0098588 bounding membrane of organelle IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
BP GO:1901264 carbohydrate derivative transport IEP HCCA
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR002423 Cpn60/GroEL/TCP-1 29 533
No external refs found!