Gb_13589


Description : plastidial mRNA processing factor (PPR10)


Gene families : OG_01_0002673 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002673_tree ,
OG_02_0001952 (LandPlants) Phylogenetic Tree(s): OG_02_0001952_tree ,
OG_03_0001479 (SeedPlants) Phylogenetic Tree(s): OG_03_0001479_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_13589
Cluster HCCA: Cluster_256

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00272430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g18940,... 0.04 Archaeplastida
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.04 Archaeplastida
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.03 Archaeplastida
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.05 Archaeplastida
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.07 Archaeplastida
Solyc07g017760.1.1 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
Zm00001e030419_P001 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.03 Archaeplastida
AMTR_s00001p00272430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g18940,... 0.04 LandPlants
AMTR_s00029p00034550 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.02 LandPlants
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.02 LandPlants
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.03 LandPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
MA_71865g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.06 LandPlants
Zm00001e030419_P001 No alias plastidial mRNA processing factor (PPR10) 0.03 LandPlants
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.02 LandPlants
AMTR_s00001p00272430 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g18940,... 0.04 SeedPlants
AMTR_s00029p00034670 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g02860... 0.02 SeedPlants
AT5G02860 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 SeedPlants
GSVIVT01029248001 No alias Pentatricopeptide repeat-containing protein At2g18940,... 0.03 SeedPlants
LOC_Os05g19380.1 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
LOC_Os07g40120.1 No alias plastidial mRNA processing factor (PPR10) 0.04 SeedPlants
MA_6146g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
MA_71865g0010 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
MA_8893308g0010 No alias plastidial mRNA processing factor (PPR10) 0.12 SeedPlants
MA_96691g0010 No alias plastidial mRNA processing factor (PPR10) 0.03 SeedPlants
Solyc07g017760.1.1 No alias plastidial mRNA processing factor (PPR10) 0.02 SeedPlants
Zm00001e030419_P001 No alias plastidial mRNA processing factor (PPR10) 0.05 SeedPlants
Zm00001e035434_P001 No alias plastidial mRNA processing factor (PPR10) 0.05 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 413 473
IPR002885 Pentatricopeptide_repeat 306 367
IPR002885 Pentatricopeptide_repeat 483 542
IPR002885 Pentatricopeptide_repeat 237 297
IPR002885 Pentatricopeptide_repeat 374 402
IPR002885 Pentatricopeptide_repeat 738 767
IPR002885 Pentatricopeptide_repeat 564 613
IPR002885 Pentatricopeptide_repeat 669 714
IPR002885 Pentatricopeptide_repeat 774 823
No external refs found!