Pnu_g04517 (ARF6)


Aliases : ARF6

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g04517
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00198750 ARF19, IAA22,... RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
AT1G19220 ARF19, IAA22, ARF11 auxin response factor 19 0.02 OrthoFinder output from all 47 species
Adi_g084657 ARF19, IAA22, ARF11 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11834 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Aob_g22072 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g11626 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037136001 ARF1 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
Len_g10088 ARF10 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g50454 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g28812 No alias ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g29541 ARF16 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of DNA-templated transcription IEA Interproscan
BP GO:0009725 response to hormone IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0016020 membrane IEP HCCA
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 128 229
IPR010525 ARF_dom 254 336
No external refs found!