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Aliases : REME1
Description : not classified & original description: none
Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00053p00090700 | evm_27.TU.AmTr_v1... | Pentatricopeptide repeat-containing protein At3g13880... | 0.02 | OrthoFinder output from all 47 species | |
| AMTR_s00084p00089150 | OTP86,... | Pentatricopeptide repeat-containing protein At3g63370,... | 0.03 | OrthoFinder output from all 47 species | |
| AT3G16610 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| AT5G52630 | MEF1 | mitochondrial RNAediting factor 1 | 0.01 | OrthoFinder output from all 47 species | |
| Adi_g005694 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g024957 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g033700 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g036486 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g036754 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g067822 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g080167 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g100862 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g111267 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Adi_g112114 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g07982 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g17512 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ala_g26450 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Als_g05671 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g05937 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g06038 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g15602 | EMB2261 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g28686 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g37586 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aob_g37596 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g16341 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aop_g23475 | No alias | ssDNA-binding protein *(OSB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene41775.t2 | Aspi01Gene41775 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene44451.t2 | Aspi01Gene44451 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Aspi01Gene63595.t1 | EMB2261, Aspi01Gene63595 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000887 | No alias | not classified & original description: CDS=1-1611 | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0001.g000999 | No alias | not classified & original description: CDS=128-2962 | 0.01 | OrthoFinder output from all 47 species | |
| Azfi_s0503.g073910 | No alias | not classified & original description: CDS=59-2179 | 0.02 | OrthoFinder output from all 47 species | |
| Azfi_s0934.g093088 | No alias | not classified & original description: CDS=1-1296 | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g20229 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g21995 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.09G032600.1 | Ceric.09G032600 | not classified & original description: pacid=50587514... | 0.01 | OrthoFinder output from all 47 species | |
| Ceric.21G010300.1 | Ceric.21G010300 | not classified & original description: pacid=50603707... | 0.01 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001130.28 | No alias | No description available | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g40815 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dac_g42645 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g46210 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dde_g05942 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g06677 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Dde_g16499 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g40952 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g17701 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ehy_g20526 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g05598 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06187 | CRR22 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06655 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g07406 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Lfl_g28060 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| MA_10428509g0010 | No alias | Pentatricopeptide repeat-containing protein At4g02750... | 0.01 | OrthoFinder output from all 47 species | |
| MA_10721g0010 | REME1 | Pentatricopeptide repeat-containing protein At4g02750... | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g09805 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Msp_g28102 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g06586 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g17545 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g21521 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g27949 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g17858 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Ore_g23480 | OTP84 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g64529 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pnu_g06218 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Pnu_g16163 | OTP84 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g03900 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g10239 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29397 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g29710 | EMB2261 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g36021 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g56908 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g59297 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sacu_v1.1_s0016.g006756 | CRR22 | not classified & original description: CDS=1-1713 | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g13564 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14540 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g14564 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g26489 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g44822 | No alias | not classified & original description: none | 0.01 | OrthoFinder output from all 47 species | |
| Spa_g45261 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g47634 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g53359 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g55575 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Spa_g56147 | VAC1, ECB2, ATECB2 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g04082 | CRR22 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g06658 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e034478_P001 | Zm00001e034478 | Pentatricopeptide repeat-containing protein At3g24000,... | 0.01 | OrthoFinder output from all 47 species | |
| Zm00001e039394_P003 | Zm00001e039394 | Pentatricopeptide repeat-containing protein At5g04780,... | 0.01 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000287 | magnesium ion binding | IEP | HCCA |
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
| MF | GO:0003824 | catalytic activity | IEP | HCCA |
| MF | GO:0004518 | nuclease activity | IEP | HCCA |
| MF | GO:0004527 | exonuclease activity | IEP | HCCA |
| MF | GO:0004743 | pyruvate kinase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
| BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
| BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
| BP | GO:0006096 | glycolytic process | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
| BP | GO:0006281 | DNA repair | IEP | HCCA |
| BP | GO:0006298 | mismatch repair | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006644 | phospholipid metabolic process | IEP | HCCA |
| BP | GO:0006650 | glycerophospholipid metabolic process | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
| BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
| BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
| BP | GO:0008150 | biological_process | IEP | HCCA |
| BP | GO:0008152 | metabolic process | IEP | HCCA |
| MF | GO:0008408 | 3'-5' exonuclease activity | IEP | HCCA |
| BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
| BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
| BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0009987 | cellular process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
| MF | GO:0016301 | kinase activity | IEP | HCCA |
| MF | GO:0016307 | phosphatidylinositol phosphate kinase activity | IEP | HCCA |
| BP | GO:0016310 | phosphorylation | IEP | HCCA |
| MF | GO:0016740 | transferase activity | IEP | HCCA |
| MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
| MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | HCCA |
| MF | GO:0016787 | hydrolase activity | IEP | HCCA |
| MF | GO:0017076 | purine nucleotide binding | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
| BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
| MF | GO:0019842 | vitamin binding | IEP | HCCA |
| MF | GO:0030170 | pyridoxal phosphate binding | IEP | HCCA |
| MF | GO:0030955 | potassium ion binding | IEP | HCCA |
| MF | GO:0030976 | thiamine pyrophosphate binding | IEP | HCCA |
| MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0031420 | alkali metal ion binding | IEP | HCCA |
| MF | GO:0032553 | ribonucleotide binding | IEP | HCCA |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | HCCA |
| BP | GO:0033554 | cellular response to stress | IEP | HCCA |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | HCCA |
| MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | HCCA |
| MF | GO:0036094 | small molecule binding | IEP | HCCA |
| MF | GO:0042393 | histone binding | IEP | HCCA |
| MF | GO:0043167 | ion binding | IEP | HCCA |
| MF | GO:0043168 | anion binding | IEP | HCCA |
| BP | GO:0044237 | cellular metabolic process | IEP | HCCA |
| BP | GO:0044238 | primary metabolic process | IEP | HCCA |
| BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
| BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0046486 | glycerolipid metabolic process | IEP | HCCA |
| BP | GO:0046488 | phosphatidylinositol metabolic process | IEP | HCCA |
| BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
| BP | GO:0050789 | regulation of biological process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| MF | GO:0050997 | quaternary ammonium group binding | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0065007 | biological regulation | IEP | HCCA |
| MF | GO:0070279 | vitamin B6 binding | IEP | HCCA |
| BP | GO:0071704 | organic substance metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| MF | GO:1901681 | sulfur compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 125 | 170 |
| IPR002885 | Pentatricopeptide_repeat | 22 | 69 |
| IPR002885 | Pentatricopeptide_repeat | 224 | 271 |
| IPR002885 | Pentatricopeptide_repeat | 98 | 117 |
| IPR002885 | Pentatricopeptide_repeat | 299 | 322 |
| IPR002885 | Pentatricopeptide_repeat | 2 | 21 |
| IPR046848 | E_motif | 341 | 392 |
| No external refs found! |