AMTR_s00002p00265690 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00002.501

Description : Chromatin organisation.DNA methylation.canonical RNA-directed DNA methylation pathway.AGO siRNA-integrating factor


Gene families : OG_01_0000124 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000124_tree ,
OG_02_0000677 (LandPlants) Phylogenetic Tree(s): OG_02_0000677_tree ,
OG_03_0000508 (SeedPlants) Phylogenetic Tree(s): OG_03_0000508_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00002p00265690
Cluster HCCA: Cluster_116

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.05 Archaeplastida
GSVIVT01025868001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Gb_13719 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Gb_20550 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.03 Archaeplastida
MA_14457g0010 No alias Protein argonaute 4A OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_14457g0020 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
MA_243101g0010 No alias Protein argonaute 1 OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_47087g0010 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Smo446086 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
Solyc01g010970.3.1 No alias Protein argonaute 7 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Zm00001e010349_P002 No alias Protein argonaute 18 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e013340_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e016179_P001 No alias Protein argonaute MEL1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
Zm00001e037347_P002 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Smo232189 No alias Chromatin organisation.DNA methylation.canonical... 0.02 LandPlants
Smo446086 No alias Chromatin organisation.DNA methylation.canonical... 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003165 Piwi 593 913
IPR003100 PAZ_dom 312 445
IPR014811 ArgoL1 259 310
No external refs found!