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  5. Pnu_g03893

Pnu_g03893


Description : not classified & original description: none


Gene families : OG0000000 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g03893
Cluster HCCA: Cluster_131

Target Alias Description ECC score Gene Family Method Actions
Aev_g07716 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g23916 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g37861 OTP84 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g20559 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Als_g58106 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22148 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g29683 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g36879 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g37336 CRR22 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g14571 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g28650 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g31824 VAC1, ECB2, ATECB2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g68090 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene43499.t1 REME1, Aspi01Gene43499 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07175 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g19882 CRR22 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g07698 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g08595 CRR2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g41810 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43235 OTP84 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g43258 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Dde_g23570 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g23754 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25000 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g28512 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dde_g35433 No alias ssDNA-binding protein *(OSB) & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g12280 CRR2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g17702 OSB1 ssDNA-binding protein *(OSB) & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01029885001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 OrthoFinder output from all 47 species
GSVIVT01030443001 No alias Pentatricopeptide repeat-containing protein At4g21065... 0.03 OrthoFinder output from all 47 species
Lfl_g02262 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g05587 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g23052 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Nbi_g10043 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ore_g23525 VAC1, ECB2, ATECB2 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g31906 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g19317 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g04004 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05095 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Ppi_g06923 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g13340 CRR22 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g32640 EMB2758 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g39260 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g56161 EMB2758 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g61239 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g06265 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g34625 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Sam_g39952 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g48925 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo102435 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.02 OrthoFinder output from all 47 species
Smo171135 OTP84 Pentatricopeptide repeat-containing protein At3g03580... 0.03 OrthoFinder output from all 47 species
Spa_g07522 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g44799 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54647 CRR2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g06658 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g16966 VAC1, ECB2, ATECB2 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e041987_P001 Zm00001e041987 Pentatricopeptide repeat-containing protein At2g37320... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 730 753
IPR002885 Pentatricopeptide_repeat 125 149
IPR002885 Pentatricopeptide_repeat 52 79
IPR002885 Pentatricopeptide_repeat 326 350
IPR002885 Pentatricopeptide_repeat 831 854
IPR002885 Pentatricopeptide_repeat 23 49
IPR046848 E_motif 878 935
IPR046849 Eplus_motif 940 961
IPR032867 DYW_dom 977 1062
IPR002885 Pentatricopeptide_repeat 250 298
IPR002885 Pentatricopeptide_repeat 756 802
IPR002885 Pentatricopeptide_repeat 351 398
IPR002885 Pentatricopeptide_repeat 150 196
IPR002885 Pentatricopeptide_repeat 453 499
IPR002885 Pentatricopeptide_repeat 554 600
IPR002885 Pentatricopeptide_repeat 655 702
No external refs found!