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  5. Pnu_g03692

Pnu_g03692


Description : component *(eL40) of large ribosomal-subunit (LSU) proteome & original description: none


Gene families : OG0000000 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g03692

Target Alias Description ECC score Gene Family Method Actions
Aev_g05687 RUB1, ATRUB1, NEDD8 RUB ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ala_g31081 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 39 species
Ala_g31252 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Ala_g32223 UBQ11 not classified & original description: none 0.01 OrthoFinder output from all 39 species
Aob_g27649 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Aob_g28432 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Aob_g43158 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.02 OrthoFinder output from all 39 species
Dcu_g38726 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Dcu_g39989 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Dcu_g46243 UBQ4 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 39 species
Dde_g41473 UBQ14 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Ehy_g12321 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Lfl_g15058 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Lfl_g26766 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Lfl_g39047 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Lfl_g41289 No alias not classified & original description: none 0.01 OrthoFinder output from all 39 species
MA_136975g0010 UBQ11 Polyubiquitin (Fragment) OS=Nicotiana sylvestris... 0.01 OrthoFinder output from all 39 species
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.01 OrthoFinder output from all 39 species
Msp_g29904 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 39 species
Msp_g43026 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.02 OrthoFinder output from all 39 species
Pp3c20_23170V3.1 Pp3c20_23170 ubiquitin extension protein 1 0.01 OrthoFinder output from all 39 species
Pp3c4_19000V3.1 UBQ6, Pp3c4_19000 ubiquitin 6 0.01 OrthoFinder output from all 39 species
Pp3c8_14230V3.1 UBQ6, Pp3c8_14230 ubiquitin 6 0.01 OrthoFinder output from all 39 species
Ppi_g05460 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Spa_g02055 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species
Spa_g51057 UBQ11 UBQ ubiquitin-fold protein & original description: none 0.01 OrthoFinder output from all 39 species
Tin_g28918 No alias component *(eL40) of large ribosomal-subunit (LSU)... 0.01 OrthoFinder output from all 39 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006486 protein glycosylation IEP HCCA
BP GO:0006487 protein N-linked glycosylation IEP HCCA
BP GO:0006811 monoatomic ion transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
CC GO:0008250 oligosaccharyltransferase complex IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0015075 monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0043413 macromolecule glycosylation IEP HCCA
BP GO:0070085 glycosylation IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0140534 endoplasmic reticulum protein-containing complex IEP HCCA
CC GO:1902494 catalytic complex IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR001975 Ribosomal_L40e 78 127
IPR000626 Ubiquitin-like_dom 3 74
No external refs found!