1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g03391

Pnu_g03391 (UBP1B)


Aliases : UBP1B

Description : stress granule assembly factor *(UBP1) & original description: none


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g03391

Target Alias Description ECC score Gene Family Method Actions
AT1G17370 UBP1B oligouridylate binding protein 1B 0.03 OrthoFinder output from all 47 species
Als_g28427 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Aob_g08315 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
Cba_g17426 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01016720001 UBP1B Oligouridylate-binding protein 1B OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
MA_10429328g0010 UBP1B mRNA-binding regulatory factor (UBP1) 0.03 OrthoFinder output from all 47 species
Solyc03g122180.4.1 UBP1B, Solyc03g122180 mRNA-binding regulatory factor (UBP1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000160 phosphorelay signal transduction system IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035556 intracellular signal transduction IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 33 99
IPR000504 RRM_dom 240 306
IPR000504 RRM_dom 118 188
No external refs found!