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  5. AMTR_s00036p00225190

AMTR_s00036p00225190 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00036.165

Description : RNA processing.messenger ribonucleoprotein particle (mRNP).mRNP export.TREX/THO mRNP trafficking complex.UAP56 helicase component


Gene families : OG_01_0002910 (Archaeplastida) Phylogenetic Tree(s): OG_01_0002910_tree ,
OG_02_0002914 (LandPlants) Phylogenetic Tree(s): OG_02_0002914_tree ,
OG_03_0002579 (SeedPlants) Phylogenetic Tree(s): OG_03_0002579_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00036p00225190
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT5G11200 No alias DEAD/DEAH box RNA helicase family protein 0.05 Archaeplastida
LOC_Os01g36920.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.05 Archaeplastida
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.07 Archaeplastida
Pp3c11_18810V3.1 No alias DEAD/DEAH box RNA helicase family protein 0.02 Archaeplastida
Pp3c7_5890V3.1 No alias DEAD/DEAH box RNA helicase family protein 0.07 Archaeplastida
Solyc06g066060.3.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.08 Archaeplastida
Zm00001e026684_P001 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 Archaeplastida
Zm00001e027715_P001 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.03 Archaeplastida
AT5G11200 No alias DEAD/DEAH box RNA helicase family protein 0.04 LandPlants
LOC_Os01g36920.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.05 LandPlants
MA_99733g0010 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 LandPlants
Mp1g02350.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.07 LandPlants
Pp3c11_18810V3.1 No alias DEAD/DEAH box RNA helicase family protein 0.02 LandPlants
Pp3c7_5890V3.1 No alias DEAD/DEAH box RNA helicase family protein 0.07 LandPlants
Solyc06g066060.3.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.08 LandPlants
Zm00001e026684_P001 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 LandPlants
Zm00001e027715_P001 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 LandPlants
AT5G11200 No alias DEAD/DEAH box RNA helicase family protein 0.04 SeedPlants
LOC_Os01g36920.2 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.05 SeedPlants
MA_99733g0010 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 SeedPlants
Solyc06g066060.3.1 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.08 SeedPlants
Zm00001e026684_P001 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 SeedPlants
Zm00001e027715_P001 No alias RNA helicase (Sub2). helicase component UAP56 of... 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 72 237
IPR001650 Helicase_C 308 384
No external refs found!