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  5. Pnu_g01345

Pnu_g01345 (ABCB19, ATABCB19,...)


Aliases : ABCB19, ATABCB19, MDR1, MDR11, ATPGP19, ATMDR1, ATMDR11, PGP19

Description : subfamily ABCB transporter & original description: none


Gene families : OG0000048 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g01345

Target Alias Description ECC score Gene Family Method Actions
Aop_g29915 PGP1, ABCB1, ATPGP1 subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene05873.t1 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000741.4 ATPGP4, PGP4, ABCB4, MDR4 ABC transporter B family member 21 OS=Arabidopsis thaliana 0.01 OrthoFinder output from all 47 species
Cre17.g725150 ATPGP4, PGP4, ABCB4, MDR4 ABC transporter B family member 7 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dde_g05513 PGP10 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g41280 PGP11 not classified & original description: none 0.02 OrthoFinder output from all 47 species
MA_102299g0010 No alias Putative multidrug resistance protein OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
MA_10280832g0010 PGP11 ABC transporter B family member 7 OS=Arabidopsis... 0.05 OrthoFinder output from all 47 species
MA_93218g0020 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Sam_g49529 No alias subfamily ABCB transporter & original description: none 0.02 OrthoFinder output from all 47 species
Smo419451 No alias Solute transport.primary active transport.ABC... 0.02 OrthoFinder output from all 47 species
Tin_g06701 ABCB19,... subfamily ABCB transporter & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
MF GO:0140359 ABC-type transporter activity IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like_ATP-bd 389 538
IPR003439 ABC_transporter-like_ATP-bd 1037 1185
IPR011527 ABC1_TM_dom 49 319
IPR011527 ABC1_TM_dom 697 968
No external refs found!