1. Home
  2. Species
  3. Psilotum nudum
  4. Sequence
  5. Pnu_g00760

Pnu_g00760 (CDC48B)


Aliases : CDC48B

Description : platform ATPase CDC48 & original description: none


Gene families : OG0000324 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000324_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pnu_g00760
Cluster HCCA: Cluster_57

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00049p00071550 emb1354, CDC48C,... Cell division control protein 48 homolog C... 0.03 OrthoFinder output from all 47 species
AMTR_s00095p00091650 CIP111,... No description available 0.02 OrthoFinder output from all 47 species
Als_g63726 CIP111 platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g04406 CDC48A, CDC48, ATCDC48 platform ATPase CDC48 & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0074.g037436 CIP111 not classified & original description: CDS=701-3814 0.03 OrthoFinder output from all 47 species
Cba_g15787 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Len_g28733 CIP111 platform ATPase CDC48 & original description: none 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0198.g025545 No alias platform ATPase CDC48 & original description: CDS=177-2717 0.03 OrthoFinder output from all 47 species
Spa_g11219 CDC48B platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g22537 No alias platform ATPase CDC48 & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000416_P002 Zm00001e000416 platform ATPase (CDC48) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016887 ATP hydrolysis activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003919 FMN adenylyltransferase activity IEP HCCA
BP GO:0006766 vitamin metabolic process IEP HCCA
BP GO:0006767 water-soluble vitamin metabolic process IEP HCCA
BP GO:0006771 riboflavin metabolic process IEP HCCA
BP GO:0009110 vitamin biosynthetic process IEP HCCA
BP GO:0009231 riboflavin biosynthetic process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
BP GO:0042364 water-soluble vitamin biosynthetic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
BP GO:0042727 flavin-containing compound biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0070566 adenylyltransferase activity IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 47 186
IPR003959 ATPase_AAA_core 321 458
IPR041569 AAA_lid_3 481 527
IPR041569 AAA_lid_3 209 244
No external refs found!