Gb_08792


Description : U-box domain-containing protein 1 OS=Medicago truncatula (sp|e4nkf8|pub1_medtr : 641.0)


Gene families : OG_01_0000227 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000227_tree ,
OG_02_0000690 (LandPlants) Phylogenetic Tree(s): OG_02_0000690_tree ,
OG_03_0001289 (SeedPlants) Phylogenetic Tree(s): OG_03_0001289_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_08792
Cluster HCCA: Cluster_182

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00030110 evm_27.TU.AmTr_v1... U-box domain-containing protein 15 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.05 Archaeplastida
AMTR_s00025p00052670 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AMTR_s00153p00035720 evm_27.TU.AmTr_v1... U-box domain-containing protein 1 OS=Medicago truncatula 0.1 Archaeplastida
AT1G10560 PUB18, ATPUB18 plant U-box 18 0.03 Archaeplastida
GSVIVT01007275001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
Gb_10627 No alias U-box domain-containing protein 13 OS=Arabidopsis... 0.05 Archaeplastida
Gb_20805 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Gb_24091 No alias U-box domain-containing protein 14 OS=Arabidopsis... 0.04 Archaeplastida
LOC_Os03g16824.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
LOC_Os06g01304.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
LOC_Os12g38210.1 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
MA_104819g0010 No alias E3 ubiquitin ligase (PUB) 0.04 Archaeplastida
MA_1773g0020 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.02 Archaeplastida
MA_27512g0010 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
MA_69133g0010 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Pp3c23_15760V3.1 No alias plant U-box 13 0.02 Archaeplastida
Smo113592 No alias U-box domain-containing protein 2 OS=Arabidopsis thaliana 0.03 Archaeplastida
Smo61948 No alias U-box domain-containing protein 13 OS=Arabidopsis thaliana 0.02 Archaeplastida
Solyc06g076040.3.1 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Solyc09g056450.4.1 No alias U-box domain-containing protein 9 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e001226_P001 No alias E3 ubiquitin ligase (PUB) 0.02 Archaeplastida
Zm00001e014377_P001 No alias U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Zm00001e014566_P002 No alias E3 ubiquitin ligase (PUB) 0.03 Archaeplastida
Zm00001e019429_P001 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.02 Archaeplastida
Zm00001e028839_P001 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.05 Archaeplastida
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.04 LandPlants
AMTR_s00153p00035720 evm_27.TU.AmTr_v1... U-box domain-containing protein 1 OS=Medicago truncatula 0.07 LandPlants
LOC_Os05g39930.1 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.02 LandPlants
MA_10431607g0010 No alias U-box domain-containing protein 1 OS=Medicago truncatula... 0.03 LandPlants
Pp3c13_16440V3.1 No alias plant U-box 13 0.01 LandPlants
Smo99101 No alias U-box domain-containing protein 1 OS=Medicago truncatula 0.01 LandPlants
Zm00001e014377_P001 No alias U-box domain-containing protein 4 OS=Oryza sativa subsp.... 0.02 LandPlants
Zm00001e028839_P001 No alias U-box domain-containing protein 16 OS=Arabidopsis... 0.02 LandPlants
AMTR_s00007p00217990 evm_27.TU.AmTr_v1... U-box domain-containing protein 16 OS=Arabidopsis thaliana 0.02 SeedPlants

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
BP GO:0016567 protein ubiquitination IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000225 Armadillo 428 465
IPR000225 Armadillo 552 590
IPR003613 Ubox_domain 292 363
No external refs found!