AMTR_s00035p00224680 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00035.51

Description : RNA biosynthesis.RNA polymerase I-dependent transcription.TFIf basal transcription factor complex.large subunit


Gene families : OG_01_0006601 (Archaeplastida) Phylogenetic Tree(s): OG_01_0006601_tree ,
OG_02_0006320 (LandPlants) Phylogenetic Tree(s): OG_02_0006320_tree ,
OG_03_0006183 (SeedPlants) Phylogenetic Tree(s): OG_03_0006183_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00035p00224680
Cluster HCCA: Cluster_268

Target Alias Description ECC score Gene Family Method Actions
Zm00001e021166_P001 No alias large subunit of TFIf basal transcription factor complex 0.03 Archaeplastida
GSVIVT01016817001 No alias RNA biosynthesis.RNA polymerase I-dependent... 0.02 LandPlants
Zm00001e021166_P001 No alias large subunit of TFIf basal transcription factor complex 0.03 LandPlants
GSVIVT01016817001 No alias RNA biosynthesis.RNA polymerase I-dependent... 0.02 SeedPlants
Zm00001e021166_P001 No alias large subunit of TFIf basal transcription factor complex 0.03 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR009668 RNA_pol-assoc_fac_A49-like 55 450
No external refs found!