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  5. Lfl_g40067

Lfl_g40067 (CKS1AT, CKS1)


Aliases : CKS1AT, CKS1

Description : scaffold component *(CKS) of cyclin-dependent kinase complex & original description: none


Gene families : OG0002701 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002701_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g40067
Cluster HCCA: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
AT2G27970 CKS2 CDK-subunit 2 0.02 OrthoFinder output from all 47 species
Aev_g22486 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Aop_g22173 CKS2 scaffold component *(CKS) of cyclin-dependent kinase... 0.12 OrthoFinder output from all 47 species
Azfi_s0218.g058576 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Ceric.02G054300.1 CKS1AT, CKS1,... scaffold component *(CKS) of cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Ceric.20G054400.1 CKS1AT, CKS1,... scaffold component *(CKS) of cyclin-dependent kinase... 0.07 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020780.5 No alias Cell cycle.regulation.cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Cre03.g180350 No alias Cell cycle.regulation.cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Dac_g26714 CKS2 scaffold component *(CKS) of cyclin-dependent kinase... 0.13 OrthoFinder output from all 47 species
Dde_g23860 CKS2 scaffold component *(CKS) of cyclin-dependent kinase... 0.02 OrthoFinder output from all 47 species
Gb_39695 CKS1AT, CKS1 scaffolding component CKS of cyclin-dependent kinase complex 0.02 OrthoFinder output from all 47 species
LOC_Os03g05300.1 LOC_Os03g05300 scaffolding component CKS of cyclin-dependent kinase complex 0.03 OrthoFinder output from all 47 species
Len_g41049 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.1 OrthoFinder output from all 47 species
MA_364061g0010 CKS1AT, CKS1 scaffolding component CKS of cyclin-dependent kinase complex 0.07 OrthoFinder output from all 47 species
Mp1g16700.1 No alias scaffolding component CKS of cyclin-dependent kinase complex 0.04 OrthoFinder output from all 47 species
Msp_g29168 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.05 OrthoFinder output from all 47 species
Nbi_g08553 CKS2 scaffold component *(CKS) of cyclin-dependent kinase... 0.15 OrthoFinder output from all 47 species
Sam_g26303 No alias scaffold component *(CKS) of cyclin-dependent kinase... 0.04 OrthoFinder output from all 47 species
Spa_g48395 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.17 OrthoFinder output from all 47 species
Tin_g18395 CKS1AT, CKS1 scaffold component *(CKS) of cyclin-dependent kinase... 0.15 OrthoFinder output from all 47 species
Tin_g28369 CKS2 scaffold component *(CKS) of cyclin-dependent kinase... 0.03 OrthoFinder output from all 47 species
Zm00001e038976_P001 CKS1AT, CKS1,... scaffolding component CKS of cyclin-dependent kinase complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004797 thymidine kinase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
MF GO:0016436 rRNA (uridine) methyltransferase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
BP GO:0032259 methylation IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
MF GO:0070042 rRNA (uridine-N3-)-methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
InterPro domains Description Start Stop
IPR000789 Cyclin-dep_kinase_reg-sub 50 116
No external refs found!