MA_27726g0010


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes a pentatricopeptide repeat protein required for chloroplast transcript accD RNA editing and early chloroplast biogenesis. EARLY CHLOROPLAST BIOGENESIS2 (ECB2)


Gene families : OG_01_0008957 (Gene family) Phylogenetic Tree(s): OG0008957_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): MA_27726g0010
Cluster HCCA cluster: Cluster_362

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01017209001 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os05g49920 Os05g0574800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc03g119950.1.1 Solyc03g119950.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Zm00001d039096 GRMZM2G455587 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 712 837
IPR002885 Pentatricopeptide_repeat 312 334
IPR002885 Pentatricopeptide_repeat 613 637
IPR002885 Pentatricopeptide_repeat 211 236
IPR002885 Pentatricopeptide_repeat 438 485
IPR002885 Pentatricopeptide_repeat 237 284
IPR002885 Pentatricopeptide_repeat 539 586
IPR002885 Pentatricopeptide_repeat 136 183
IPR002885 Pentatricopeptide_repeat 338 384
No external refs found!