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  5. Lfl_g39720

Lfl_g39720 (GAMMA-H2AX, HTA5,...)


Aliases : GAMMA-H2AX, HTA5, G-H2AX, H2AXA

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g39720
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00058p00158560 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species
Aev_g01852 GAMMA-H2AX,... histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g34046 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Als_g05288 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene48040.t1 HTA7, Aspi01Gene48040 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g07967 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ceric.26G005600.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50599432... 0.02 OrthoFinder output from all 47 species
Ceric.26G005800.1 GAMMA-H2AX,... histone *(H2A) & original description: pacid=50599346... 0.02 OrthoFinder output from all 47 species
Dcu_g38875 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Len_g03984 HTA7 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g37716 GAMMA-H2AX,... histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g03457 GAMMA-H2AX,... histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Smo170948 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 127 160
IPR007125 Histone_H2A/H2B/H3 44 124
No external refs found!