Gb_06104


Description : Pentatricopeptide repeat-containing protein At4g30825, chloroplastic OS=Arabidopsis thaliana (sp|o65567|pp342_arath : 798.0)


Gene families : OG_01_0007364 (Archaeplastida) Phylogenetic Tree(s): OG_01_0007364_tree ,
OG_02_0005355 (LandPlants) Phylogenetic Tree(s): OG_02_0005355_tree ,
OG_03_0010911 (SeedPlants) Phylogenetic Tree(s): OG_03_0010911_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_06104
Cluster HCCA: Cluster_230

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.04 Archaeplastida
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 Archaeplastida
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 Archaeplastida
Pp3c5_2530V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
Solyc07g005950.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 Archaeplastida
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 LandPlants
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 LandPlants
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 LandPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 LandPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.04 LandPlants
AMTR_s00065p00020910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
AT4G30825 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 SeedPlants
GSVIVT01014050001 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants
LOC_Os09g25550.1 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.02 SeedPlants
MA_187850g0010 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants
Zm00001e040095_P002 No alias Pentatricopeptide repeat-containing protein At4g30825,... 0.03 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 802 844
IPR002885 Pentatricopeptide_repeat 483 530
IPR033443 PPR_long 321 462
IPR002885 Pentatricopeptide_repeat 730 757
IPR002885 Pentatricopeptide_repeat 770 794
IPR002885 Pentatricopeptide_repeat 699 723
IPR002885 Pentatricopeptide_repeat 646 695
IPR002885 Pentatricopeptide_repeat 892 951
IPR002885 Pentatricopeptide_repeat 961 1019
No external refs found!