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  5. Lfl_g38642

Lfl_g38642


Description : not classified & original description: none


Gene families : OG0004023 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004023_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Lfl_g38642
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
Adi_g012590 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Adi_g017907 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g114117 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g08664 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ala_g12875 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Ala_g16234 CRM3, HCF152 not classified & original description: none 0.08 OrthoFinder output from all 47 species
Als_g10416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Als_g21149 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g05987 No alias not classified & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g08020 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g15637 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Azfi_s0032.g024689 No alias not classified & original description: CDS=239-2569 0.04 OrthoFinder output from all 47 species
Cba_g25946 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g57127 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.12G037000.1 Ceric.12G037000 not classified & original description: pacid=50600637... 0.04 OrthoFinder output from all 47 species
Ceric.1Z219100.1 Ceric.1Z219100 not classified & original description: pacid=50617071... 0.05 OrthoFinder output from all 47 species
Ceric.23G078700.1 Ceric.23G078700 not classified & original description: pacid=50610433... 0.03 OrthoFinder output from all 47 species
Dac_g23808 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g15035 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dcu_g23419 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g29928 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Len_g15440 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g06340 CRM3, HCF152 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Nbi_g08780 CRM3, HCF152 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Pir_g14407 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Pir_g19507 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g10297 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g15789 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sam_g37245 No alias not classified & original description: none 0.05 OrthoFinder output from all 47 species
Smo441948 No alias Pentatricopeptide repeat-containing protein At2g31400,... 0.03 OrthoFinder output from all 47 species
Spa_g15086 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0015969 guanosine tetraphosphate metabolic process IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034035 purine ribonucleoside bisphosphate metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 208 251
IPR002885 Pentatricopeptide_repeat 327 374
IPR002885 Pentatricopeptide_repeat 432 479
IPR002885 Pentatricopeptide_repeat 401 428
IPR002885 Pentatricopeptide_repeat 296 323
No external refs found!