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  5. Cba_g78784

Cba_g78784 (SAMDC)


Aliases : SAMDC

Description : EC_4.1 carbon-carbon lyase & original description: none


Gene families : OG0000356 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000356_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g78784

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00164800 evm_27.TU.AmTr_v1... Polyamine metabolism.putrescine.synthesis.cytosolic... 0.02 OrthoFinder output from all 47 species
AMTR_s00019p00109640 SAMDC,... Polyamine... 0.02 OrthoFinder output from all 47 species
AT3G25570 No alias Adenosylmethionine decarboxylase family protein 0.02 OrthoFinder output from all 47 species
Aev_g11762 No alias ornithine decarboxylase & original description: none 0.03 OrthoFinder output from all 47 species
Ala_g11416 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene54070.t1 Aspi01Gene54070 EC_4.1 carbon-carbon lyase & original description: none 0.05 OrthoFinder output from all 47 species
Lfl_g10434 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
MA_123449g0010 No alias S-adenosyl methionine decarboxylase 0.02 OrthoFinder output from all 47 species
Mp7g18100.1 No alias S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species
Nbi_g07578 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g02769 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g13674 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g04665 No alias EC_4.1 carbon-carbon lyase & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g09591 No alias EC_4.1 carbon-carbon lyase & original description: none 0.04 OrthoFinder output from all 47 species
Smo106449 No alias Polyamine... 0.02 OrthoFinder output from all 47 species
Smo232921 No alias Polyamine metabolism.putrescine.synthesis.cytosolic... 0.03 OrthoFinder output from all 47 species
Solyc01g080380.4.1 SAMDC4, BUD2,... S-adenosyl methionine decarboxylase 0.06 OrthoFinder output from all 47 species
Tin_g00861 No alias EC_4.1 carbon-carbon lyase & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g08684 No alias ornithine decarboxylase & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e041156_P001 Zm00001e041156 S-adenosyl methionine decarboxylase 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity IEP HCCA
MF GO:0008417 fucosyltransferase activity IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0031127 alpha-(1,2)-fucosyltransferase activity IEP HCCA
BP GO:0042546 cell wall biogenesis IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
InterPro domains Description Start Stop
IPR001985 S-AdoMet_decarboxylase 14 354
IPR022644 De-COase2_N 464 619
No external refs found!