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  5. Cba_g78608

Cba_g78608 (HTA2)


Aliases : HTA2

Description : histone *(H2A) & original description: none


Gene families : OG0000117 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000117_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g78608

Target Alias Description ECC score Gene Family Method Actions
Aspi01Gene40787.t1 HTA6, Aspi01Gene40787 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0678.g081837 HTA10 histone *(H2A) & original description: CDS=127-525 0.03 OrthoFinder output from all 47 species
Cba_g01576 HTA6 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.01G127000.1 HTA7, Ceric.01G127000 histone *(H2A) & original description: pacid=50592416... 0.04 OrthoFinder output from all 47 species
Ceric.01G127100.1 HTA6, Ceric.01G127100 histone *(H2A) & original description: pacid=50591885... 0.04 OrthoFinder output from all 47 species
Ceric.1Z006200.1 HTA7, Ceric.1Z006200 histone *(H2A) & original description: pacid=50569283... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001085.4 GAMMA-H2AX,... Chromatin organisation.histones.H2A-type histone 0.04 OrthoFinder output from all 47 species
Dcu_g12386 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g12272 HTA6 histone *(H2A) & original description: none 0.04 OrthoFinder output from all 47 species
Len_g17428 GAMMA-H2AX,... histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g26003 HTA13 histone *(H2A) & original description: none 0.06 OrthoFinder output from all 47 species
Nbi_g42735 RAT5, HTA1, ATHTA1 histone *(H2A) & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g05881 HTA6 histone *(H2A) & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0154.g023569 HTA7 histone *(H2A) & original description: CDS=1-555 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0210.g025887 GAMMA-H2AX,... histone *(H2A) & original description: CDS=1-531 0.05 OrthoFinder output from all 47 species
Tin_g06729 HTA2 histone *(H2A) & original description: none 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 109 142
IPR007125 Histone_H2A/H2B/H3 47 106
No external refs found!