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  5. Cba_g78264

Cba_g78264 (ARF16)


Aliases : ARF16

Description : ARF-type transcription factor & original description: none


Gene families : OG0000088 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000088_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g78264

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00200760 ARF4,... RNA biosynthesis.transcriptional activation.B3... 0.02 OrthoFinder output from all 47 species
AMTR_s00044p00116500 ARF1,... Auxin response factor 7 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
AT1G59750 ARF1 auxin response factor 1 0.03 OrthoFinder output from all 47 species
AT5G60450 ARF4 auxin response factor 4 0.02 OrthoFinder output from all 47 species
Als_g14726 ARF6 ARF-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Aob_g22075 ARF6 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g19294 ARF16 ARF-type transcription factor & original description: none 0.01 OrthoFinder output from all 47 species
Dac_g05759 ARF6 ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Dac_g32674 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Ehy_g08681 ARF6 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g15200 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019566001 ARF9 RNA biosynthesis.transcriptional activation.B3... 0.05 OrthoFinder output from all 47 species
GSVIVT01027166001 ARF11 RNA biosynthesis.transcriptional activation.B3... 0.03 OrthoFinder output from all 47 species
GSVIVT01035204001 ARF8, ATARF8 RNA biosynthesis.transcriptional activation.B3... 0.04 OrthoFinder output from all 47 species
GSVIVT01035205001 ARF8, ATARF8 Auxin response factor 12 OS=Oryza sativa subsp. japonica 0.02 OrthoFinder output from all 47 species
LOC_Os04g36054.1 ARF1, LOC_Os04g36054 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
LOC_Os12g41950.1 ARF6, LOC_Os12g41950 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Lfl_g18657 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
MA_127981g0010 ARF4 Auxin response factor 4 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp1g12750.1 ARF6 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Ore_g19283 ARF4 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g50454 TIR5, MSG1,... ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g17376 ARF16 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g047460.3.1 ARF19, IAA22,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Spa_g29254 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g46724 HSS, ARF1-BP, ARF2, ORE14 ARF-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003229_P002 ARF6, Zm00001e003229 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e006640_P002 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e014833_P002 ARF1, Zm00001e014833 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e016366_P002 ARF11, Zm00001e016366 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e030325_P003 ARF6, Zm00001e030325 transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e039552_P004 HSS, ARF1-BP,... transcription factor (ARF) 0.03 OrthoFinder output from all 47 species
Zm00001e041866_P001 MP, IAA24, ARF5,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species
Zm00001e041910_P003 ARF8, ATARF8,... transcription factor (ARF) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0030599 pectinesterase activity IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
BP GO:0042545 cell wall modification IEP HCCA
BP GO:0045229 external encapsulating structure organization IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0052689 carboxylic ester hydrolase activity IEP HCCA
BP GO:0071554 cell wall organization or biogenesis IEP HCCA
BP GO:0071555 cell wall organization IEP HCCA
InterPro domains Description Start Stop
IPR010525 ARF_dom 335 418
IPR003340 B3_DNA-bd 149 250
No external refs found!