Cba_g77168

Description : helicase UAP56 & original description: none

Gene families : OG0002123 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002123_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Cba_g77168

Target	Alias	Description	ECC score	Gene Family Method
AT5G11170	No alias	DEAD/DEAH box RNA helicase family protein	0.03	OrthoFinder output from all 47 species
AT5G11200	No alias	DEAD/DEAH box RNA helicase family protein	0.02	OrthoFinder output from all 47 species
Aop_g30475	No alias	helicase UAP56 & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g21343	No alias	helicase UAP56 & original description: none	0.03	OrthoFinder output from all 47 species
Gb_14863	No alias	RNA helicase (Sub2). helicase component UAP56 of...	0.03	OrthoFinder output from all 47 species
Len_g56014	No alias	helicase UAP56 & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g07693	No alias	helicase UAP56 & original description: none	0.03	OrthoFinder output from all 47 species
Solyc08g061000.4.1	Solyc08g061000	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Zm00001e026684_P001	Zm00001e026684	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species
Zm00001e027715_P001	Zm00001e027715	RNA helicase (Sub2). helicase component UAP56 of...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	2	153
IPR001650	Helicase_C	193	300

External Links

No external refs found!