Gb_05359


Description : transcription factor (MADS/AGL)


Gene families : OG_01_0000011 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000011_tree ,
OG_02_0000008 (LandPlants) Phylogenetic Tree(s): OG_02_0000008_tree ,
OG_03_0015632 (SeedPlants) Phylogenetic Tree(s): OG_03_0015632_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_05359
Cluster HCCA: Cluster_144

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00217560 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 Archaeplastida
AMTR_s00089p00081270 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
AMTR_s00140p00045380 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
AT1G71692 XAL1, AGL12 AGAMOUS-like 12 0.02 Archaeplastida
GSVIVT01006592001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 Archaeplastida
GSVIVT01018839001 No alias Floral homeotic protein DEFICIENS OS=Antirrhinum majus 0.03 Archaeplastida
GSVIVT01022182001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.02 Archaeplastida
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 Archaeplastida
LOC_Os06g01890.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
LOC_Os06g23980.1 No alias MADS-box transcription factor 27 OS=Oryza sativa subsp.... 0.03 Archaeplastida
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.06 Archaeplastida
Solyc03g114840.3.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc04g081000.3.1 No alias transcription factor (MADS/AGL) 0.02 Archaeplastida
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Solyc11g032100.2.1 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e000846_P003 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.04 Archaeplastida
Zm00001e038716_P004 No alias transcription factor (MADS/AGL) 0.03 Archaeplastida
AMTR_s00001p00267050 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AMTR_s00017p00244900 evm_27.TU.AmTr_v1... Floral homeotic protein PMADS 2 OS=Petunia hybrida 0.03 LandPlants
AMTR_s00109p00015260 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.MADS box... 0.02 LandPlants
AT2G22630 AGL17 AGAMOUS-like 17 0.02 LandPlants
GSVIVT01006592001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.03 LandPlants
GSVIVT01033253001 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.04 LandPlants
LOC_Os01g66290.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os02g45770.1 No alias transcription factor (MADS/AGL) 0.02 LandPlants
LOC_Os06g23950.1 No alias transcription factor (MADS/AGL) 0.04 LandPlants
MA_32676g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_8748850g0010 No alias transcription factor (MADS/AGL) 0.03 LandPlants
MA_899014g0010 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Smo121275 No alias RNA biosynthesis.transcriptional activation.MADS box... 0.01 LandPlants
Solyc01g080785.1.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc02g089210.4.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc03g114840.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc10g044965.1.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc12g038510.2.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Solyc12g056460.3.1 No alias transcription factor (MADS/AGL) 0.03 LandPlants
Zm00001e005708_P002 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e006950_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e010125_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e023236_P005 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e027031_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e027034_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants
Zm00001e034629_P001 No alias transcription factor (MADS/AGL) 0.02 LandPlants

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0046983 protein dimerization activity IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002100 TF_MADSbox 107 147
No external refs found!