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  5. Cba_g68744

Cba_g68744


Description : nucleoporin of nuclear pore complex *(NUP50) & original description: none


Gene families : OG0003460 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003460_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g68744
Cluster HCCA: Cluster_241

Target Alias Description ECC score Gene Family Method Actions
AT3G15970 No alias NUP50 (Nucleoporin 50 kDa) protein 0.02 OrthoFinder output from all 47 species
Als_g05002 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Als_g33092 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.04 OrthoFinder output from all 47 species
Aob_g05101 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0021.g015765 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Ceric.05G088800.1 Ceric.05G088800 nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os05g28190.1 LOC_Os05g28190 NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Len_g15298 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
MA_167441g0010 No alias NUP50 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
MA_94706g0010 No alias NUP50 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species
Mp5g18610.1 No alias NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Nbi_g11681 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Spa_g08466 No alias nucleoporin of nuclear pore complex *(NUP50) & original... 0.02 OrthoFinder output from all 47 species
Zm00001e020069_P002 Zm00001e020069 NUP50 nucleoporin of nuclear pore complex 0.03 OrthoFinder output from all 47 species
Zm00001e028119_P001 Zm00001e028119 NUP50 nucleoporin of nuclear pore complex 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0046907 intracellular transport IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000271 polysaccharide biosynthetic process IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006073 cellular glucan metabolic process IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008194 UDP-glycosyltransferase activity IEP HCCA
BP GO:0009250 glucan biosynthetic process IEP HCCA
BP GO:0016051 carbohydrate biosynthetic process IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0033692 cellular polysaccharide biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034637 cellular carbohydrate biosynthetic process IEP HCCA
MF GO:0035251 UDP-glucosyltransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044042 glucan metabolic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044262 cellular carbohydrate metabolic process IEP HCCA
BP GO:0044264 cellular polysaccharide metabolic process IEP HCCA
MF GO:0046527 glucosyltransferase activity IEP HCCA
BP GO:0051273 beta-glucan metabolic process IEP HCCA
BP GO:0051274 beta-glucan biosynthetic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 13 67
IPR000156 Ran_bind_dom 392 505
No external refs found!