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  5. Cba_g68683

Cba_g68683


Description : regulatory GTPase (NOG1) of LSU processome & original description: none


Gene families : OG0004754 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Cba_g68683

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00241220 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.02 OrthoFinder output from all 47 species
AT1G50920 No alias Nucleolar GTP-binding protein 0.02 OrthoFinder output from all 47 species
Adi_g020856 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Aev_g12809 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Aob_g02108 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Aop_g01799 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Azfi_s0034.g025335 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
Dcu_g03970 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species
LOC_Os06g09570.1 LOC_Os06g09570 NOG1 LSU processome regulatory GTPase 0.03 OrthoFinder output from all 47 species
Lfl_g02079 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.05 OrthoFinder output from all 47 species
Pir_g05601 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g002936 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.02 OrthoFinder output from all 47 species
Smo231970 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.03 OrthoFinder output from all 47 species
Solyc01g081010.4.1 Solyc01g081010 NOG1 LSU processome regulatory GTPase 0.02 OrthoFinder output from all 47 species
Spa_g09142 No alias regulatory GTPase (NOG1) of LSU processome & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005525 GTP binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008234 cysteine-type peptidase activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR041623 NOG1_N 41 200
IPR010674 NOG1_Rossman_fold_dom 270 327
IPR012973 NOG_C 445 498
No external refs found!