Gb_04643


Description : RING-H2 finger protein ATL60 OS=Arabidopsis thaliana (sp|p0c035|atl60_arath : 90.9)


Gene families : OG_01_0000004 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_02_0000003 (LandPlants) Phylogenetic Tree(s): OG_02_0000003_tree ,
OG_03_0000056 (SeedPlants) Phylogenetic Tree(s): OG_03_0000056_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Gb_04643
Cluster HCCA: Cluster_135

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00267830 evm_27.TU.AmTr_v1... Nutrient uptake.iron uptake.regulation.IDF1 IRT1-ubiquitin ligase 0.03 Archaeplastida
AMTR_s00008p00185200 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.04 Archaeplastida
AT1G04360 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G18670 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT2G42350 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT3G05200 ATL6 RING/U-box superfamily protein 0.02 Archaeplastida
AT3G60966 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G00305 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT4G11370 RHA1A RING-H2 finger A1A 0.04 Archaeplastida
AT4G17245 No alias RING/U-box superfamily protein 0.03 Archaeplastida
AT4G33565 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G10380 ATRING1, RING1 RING/U-box superfamily protein 0.09 Archaeplastida
AT5G27420 ATL31, CNI1 carbon/nitrogen insensitive 1 0.04 Archaeplastida
AT5G53110 No alias RING/U-box superfamily protein 0.04 Archaeplastida
AT5G66070 No alias RING/U-box superfamily protein 0.05 Archaeplastida
GSVIVT01000538001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01012018001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01012020001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 Archaeplastida
GSVIVT01038717001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.03 Archaeplastida
Gb_05381 No alias RHA2 signal transducer of abscisic acid perception 0.04 Archaeplastida
Gb_14777 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Gb_14778 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
Gb_28980 No alias no hits & (original description: none) 0.04 Archaeplastida
Gb_40644 No alias no hits & (original description: none) 0.08 Archaeplastida
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g20910.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os01g55110.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os02g45390.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os02g45780.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os02g52210.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.06 Archaeplastida
LOC_Os04g48310.1 No alias RING-H2 finger protein ATL48 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os05g15170.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os07g06560.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os08g43670.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
LOC_Os08g44950.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
LOC_Os12g24490.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
LOC_Os12g42530.1 No alias no hits & (original description: none) 0.03 Archaeplastida
LOC_Os12g42540.1 No alias RING-H2 finger protein ATL70 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_10106144g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_101154g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_10427748g0010 No alias no hits & (original description: none) 0.06 Archaeplastida
MA_10433358g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_114175g0010 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
MA_1252g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_132693g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_227897g0010 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
MA_26001g0020 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_37578g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_391590g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_465316g0010 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
MA_479316g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_5319g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_569551g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_759689g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_77628g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_786911g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_8609304g0010 No alias no hits & (original description: none) 0.05 Archaeplastida
MA_8710804g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_904294g0010 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
MA_9764263g0010 No alias RING-H2 finger protein ATL67 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Mp1g27170.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Mp3g00390.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Pp3c23_1651V3.1 No alias RING/U-box superfamily protein 0.02 Archaeplastida
Solyc01g066430.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc01g105620.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g083400.3.1 No alias NEP1-interacting protein 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc03g083460.3.1 No alias RING-H2 finger protein ATL22 OS=Arabidopsis thaliana... 0.06 Archaeplastida
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc04g074790.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc06g061250.3.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Solyc09g010650.1.1 No alias RING-H2 finger protein ATL33 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc10g008080.3.1 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Solyc11g010330.3.1 No alias RING-H2-class E3 ligase 0.04 Archaeplastida
Solyc12g055710.1.1 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e003264_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e009988_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e010029_P001 No alias ubiquitin protein ligase (XERICO) 0.02 Archaeplastida
Zm00001e014709_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e014832_P001 No alias RING-H2-class E3 ligase 0.03 Archaeplastida
Zm00001e015449_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e019779_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e022742_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e022781_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e023238_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e023585_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e026193_P001 No alias RING-H2-class E3 ligase 0.05 Archaeplastida
Zm00001e026906_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e030930_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e031874_P001 No alias no hits & (original description: none) 0.02 Archaeplastida
Zm00001e032838_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e034421_P001 No alias RING-H2-class E3 ligase 0.02 Archaeplastida
Zm00001e038229_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
AMTR_s00008p00200880 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants
AMTR_s00129p00065710 evm_27.TU.AmTr_v1... Protein degradation.peptide tagging.Ubiquitin... 0.03 LandPlants
AT1G04360 No alias RING/U-box superfamily protein 0.02 LandPlants
AT2G18670 No alias RING/U-box superfamily protein 0.02 LandPlants
AT2G42350 No alias RING/U-box superfamily protein 0.02 LandPlants
AT4G33565 No alias RING/U-box superfamily protein 0.02 LandPlants
AT5G10380 ATRING1, RING1 RING/U-box superfamily protein 0.08 LandPlants
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.05 LandPlants
Gb_14777 No alias RING-H2-class E3 ligase 0.04 LandPlants
Gb_14778 No alias RING-H2-class E3 ligase 0.05 LandPlants
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
LOC_Os02g15060.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
LOC_Os02g36330.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
LOC_Os04g37740.1 No alias RING-H2-class E3 ligase 0.04 LandPlants
LOC_Os06g09310.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
LOC_Os06g34530.1 No alias no hits & (original description: none) 0.02 LandPlants
LOC_Os08g44950.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
LOC_Os12g24490.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
LOC_Os12g42530.1 No alias no hits & (original description: none) 0.03 LandPlants
MA_10106144g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_101154g0010 No alias RING-H2-class E3 ligase 0.05 LandPlants
MA_10208579g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_10427748g0010 No alias no hits & (original description: none) 0.05 LandPlants
MA_10433358g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.04 LandPlants
MA_114175g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_1252g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_132693g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_227897g0010 No alias RING-H2-class E3 ligase 0.05 LandPlants
MA_26001g0020 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_308999g0010 No alias RING-H2 finger protein ATL3 OS=Arabidopsis thaliana... 0.02 LandPlants
MA_43543g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_465316g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_479316g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_5319g0010 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_569551g0010 No alias no hits & (original description: none) 0.03 LandPlants
MA_77628g0010 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_786911g0010 No alias RING-H2-class E3 ligase 0.03 LandPlants
MA_8609304g0010 No alias no hits & (original description: none) 0.04 LandPlants
MA_8710804g0010 No alias no hits & (original description: none) 0.02 LandPlants
MA_904294g0010 No alias RING-H2-class E3 ligase 0.02 LandPlants
MA_9143538g0010 No alias no hits & (original description: none) 0.02 LandPlants
Mp3g00390.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
Solyc06g061250.3.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc06g150136.1.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc10g008080.3.1 No alias RING-H2-class E3 ligase 0.02 LandPlants
Solyc11g010330.3.1 No alias RING-H2-class E3 ligase 0.03 LandPlants
Zm00001e000398_P001 No alias RING-H2-class E3 ligase 0.01 LandPlants
Zm00001e002272_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e007129_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
Zm00001e022781_P001 No alias RING-H2-class E3 ligase 0.04 LandPlants
Zm00001e038229_P001 No alias no hits & (original description: none) 0.03 LandPlants
Zm00001e039314_P001 No alias RING-H2-class E3 ligase 0.02 LandPlants
GSVIVT01020665001 No alias Protein degradation.peptide tagging.Ubiquitin... 0.04 SeedPlants
Gb_14778 No alias RING-H2-class E3 ligase 0.05 SeedPlants
LOC_Os01g11520.1 No alias RING-H2-class E3 ligase 0.01 SeedPlants
MA_101154g0010 No alias RING-H2-class E3 ligase 0.03 SeedPlants
MA_10433358g0010 No alias no hits & (original description: none) 0.02 SeedPlants
MA_10436650g0010 No alias RING-H2-class E3 ligase 0.04 SeedPlants
MA_1252g0010 No alias no hits & (original description: none) 0.04 SeedPlants
MA_227897g0010 No alias RING-H2-class E3 ligase 0.04 SeedPlants
MA_479316g0010 No alias no hits & (original description: none) 0.04 SeedPlants
MA_77628g0010 No alias RING-H2-class E3 ligase 0.03 SeedPlants
MA_786911g0010 No alias RING-H2-class E3 ligase 0.02 SeedPlants
MA_8710804g0010 No alias no hits & (original description: none) 0.02 SeedPlants
Solyc03g123680.1.1 No alias RING-H2-class E3 ligase 0.02 SeedPlants
Zm00001e038229_P001 No alias no hits & (original description: none) 0.02 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001841 Znf_RING 155 194
No external refs found!