AMTR_s00033p00127000 (evm_27.TU.AmTr_v1.0_sc...)


Aliases : evm_27.TU.AmTr_v1.0_scaffold00033.66

Description : RNA biosynthesis.siRNA biogenesis.DCL-type endoribonuclease


Gene families : OG_01_0000221 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000221_tree ,
OG_02_0000940 (LandPlants) Phylogenetic Tree(s): OG_02_0000940_tree ,
OG_03_0003835 (SeedPlants) Phylogenetic Tree(s): OG_03_0003835_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AMTR_s00033p00127000
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
AT5G45150 RTL3 RNAse THREE-like protein 3 0.03 Archaeplastida
Cre02.g141000 No alias Endoribonuclease Dicer homolog 1 OS=Arabidopsis thaliana 0.01 Archaeplastida
GSVIVT01030481001 No alias Ribonuclease 3-like protein 3 OS=Oryza sativa subsp. japonica 0.04 Archaeplastida
Gb_34767 No alias endoribonuclease (DCL3). endoribonuclease (DCL4) 0.02 Archaeplastida
Gb_37867 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
LOC_Os09g14610.1 No alias Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp.... 0.02 Archaeplastida
MA_10432726g0010 No alias Endoribonuclease Dicer homolog 1 OS=Oryza sativa subsp.... 0.02 Archaeplastida
Pp3c1_24950V3.1 No alias dicer-like 1 0.02 Archaeplastida
Pp3c23_3450V3.1 No alias dicer-like 3 0.02 Archaeplastida
Pp3c2_15900V3.1 No alias dicer-like 1 0.02 Archaeplastida
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc08g067210.3.1 No alias endoribonuclease (DCL3) 0.04 Archaeplastida
Solyc11g008540.3.1 No alias Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Zm00001e000158_P001 No alias endoribonuclease component DCL1 of DCL1-HYL1 miRNA... 0.02 Archaeplastida
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.04 Archaeplastida
Zm00001e041209_P001 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 Archaeplastida
Gb_34767 No alias endoribonuclease (DCL3). endoribonuclease (DCL4) 0.02 LandPlants
MA_8664686g0010 No alias no hits & (original description: none) 0.01 LandPlants
Pp3c23_3450V3.1 No alias dicer-like 3 0.02 LandPlants
Solyc06g048960.4.1 No alias no hits & (original description: none) 0.01 LandPlants
Solyc08g067210.3.1 No alias endoribonuclease (DCL3) 0.02 LandPlants
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.04 LandPlants
Zm00001e041209_P001 No alias endoribonuclease (DCL4). component DRB7 of DRB4-DRB7.1... 0.02 LandPlants
Gb_34767 No alias endoribonuclease (DCL3). endoribonuclease (DCL4) 0.01 SeedPlants
LOC_Os01g68120.1 No alias endoribonuclease (DCL3) 0.01 SeedPlants
Zm00001e018890_P004 No alias endoribonuclease (DCL3) 0.04 SeedPlants

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0004386 helicase activity IEA Interproscan
MF GO:0004525 ribonuclease III activity IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006396 RNA processing IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR001650 Helicase_C 445 504
IPR003100 PAZ_dom 900 1030
IPR000999 RNase_III_dom 1284 1396
IPR000999 RNase_III_dom 1072 1204
IPR005034 Dicer_dimerisation_dom 576 664
IPR006935 Helicase/UvrB_N 33 199
No external refs found!